Simon Kasif

According to our database, Simon Kasif authored at least 60 papers between 1982 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of two.

2024

Towards a Healthy AI Tradition: Lessons from Biology and Biomedical Science.

Simon Kasif

CoRR, 2024

A Trilogy of AI Safety Frameworks: Paths from Facts and Knowledge Gaps to Reliable Predictions and New Knowledge.

Simon Kasif

CoRR, 2024

2020

Artificial Tikkun Olam: AI Can Be Our Best Friend in Building an Open Human-Computer Society.

Simon Kasif

CoRR, 2020

2016

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps.

Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Simon Kasif, Richard J. Roberts, Martin Steffen

Nucleic Acids Res., 2016

2011

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.

Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif

Nucleic Acids Res., 2011

2010

Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle.

Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra

Artif. Intell. Medicine, 2010

2009

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance.

Peter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane

Bioinform., 2009

Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering.

Dikla Dotan-Cohen, Simon Kasif, Avraham A. Melkman

Bioinform., 2009

2008

Formula dissection: A parallel algorithm for constraint satisfaction.

John H. Reif, Simon Kasif, Deepak Sherlekar

Comput. Math. Appl., 2008

Integration of relational and hierarchical network information for protein function prediction.

Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk

BMC Bioinform., 2008

Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles.

Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction.

Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk

Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007

Hierarchical tree snipping: clustering guided by prior knowledge.

Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif

Bioinform., 2007

2006

Multi-Node Graphs: A Framework for Multiplexed Biological Assays.

Noga Alon, Vera Asodi, Charles Cantor, Simon Kasif, John Rachlin

J. Comput. Biol., 2006

2005

GEMS: a web server for biclustering analysis of expression data.

Chang-Jiun Wu, Simon Kasif

Nucleic Acids Res., 2005

MuPlex: multi-objective multiplex PCR assay design.

John Rachlin, Chunming Ding, Charles Cantor, Simon Kasif

Nucleic Acids Res., 2005

Phylogenetic detection of conserved gene clusters in microbial genomes.

Yu Zheng, Brian P. Anton, Richard J. Roberts, Simon Kasif

BMC Bioinform., 2005

Less is more: towards an optimal universal description of protein folds.

Joseph D. Szustakowski, Simon Kasif, Zhiping Weng

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004

Learning a Hidden Matching.

Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov

SIAM J. Comput., 2004

topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association.

Nathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang

Nucleic Acids Res., 2004

2003

Identification of functional links between genes using phylogenetic profiles.

Jie Wu, Simon Kasif, Charles DeLisi

Bioinform., 2003

RankGene: identification of diagnostic genes based on expression data.

Yang Su, T. M. Murali, Vladimir Pavlovic, Michael Schaffer, Simon Kasif

Bioinform., 2003

Extracting Conserved Gene Expression Motifs from Gene Expression Data.

T. M. Murali, Simon Kasif

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Predicting protein function from protein/protein interaction data: a probabilistic approach.

Stanley Letovsky, Simon Kasif

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002

A Bayesian framework for combining gene predictions.

Vladimir Pavlovic, Ashutosh Garg, Simon Kasif

Bioinform., 2002

2001

An optimal procedure for gap closing in whole genome shotgun sequencing.

Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000

Modeling splice sites with Bayes networks.

Deyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif

Bioinform., 2000

1998

A Probabilistic Framework for Memory-Based Reasoning.

Simon Kasif, Steven Salzberg, David L. Waltz, John Rachlin, David W. Aha

Artif. Intell., 1998

1996

Learning nested concept classes with limited storage.

David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan

J. Exp. Theor. Artif. Intell., 1996

Logarithmic-Time Updates and Queries in Probabilistic Networks.

Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl

J. Artif. Intell. Res., 1996

Towards a Constraint-Based Engineering Framework for Algorithm Design and Application.

Simon Kasif

ACM Comput. Surv., 1996

Local Induction of Decision Trees: Towards Interactive Data Mining.

Truxton Fulton, Simon Kasif, Steven Salzberg, David L. Waltz

Proceedings of the Second International Conference on Knowledge Discovery and Data Mining (KDD-96), 1996

1995

Best-Case Results for Nearest-Neighbor Learning.

Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif

IEEE Trans. Pattern Anal. Mach. Intell., 1995

On Reasoning From Data.

David L. Waltz, Simon Kasif

ACM Comput. Surv., 1995

Term Matching on a Mesh-Connected Array of Processors.

Arthur L. Delcher, Simon Kasif

Ann. Math. Artif. Intell., 1995

Efficient Algorithms for Finding Multi-way Splits for Decision Trees.

Truxton Fulton, Simon Kasif, Steven Salzberg

Proceedings of the Machine Learning, 1995

1994

A System for Induction of Oblique Decision Trees.

Sreerama K. Murthy, Simon Kasif, Steven Salzberg

J. Artif. Intell. Res., 1994

Local Consistency in Parallel Constraint Satisfaction Networks.

Simon Kasif, Arthur L. Delcher

Artif. Intell., 1994

Towards a Better Understanding of Memory-based Reasoning Systems.

John Rachlin, Simon Kasif, Steven Salzberg, David W. Aha

Proceedings of the Machine Learning, 1994

Exploiting Algebraic Structure in Parallel State Space Search.

Jonathan Bright, Simon Kasif, Lewis Stiller

Proceedings of the 12th National Conference on Artificial Intelligence, Seattle, WA, USA, July 31, 1994

1993

The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning.

David G. Heath, Simon Kasif

Comput. Geom., 1993

Some Results on the Computational Complexity of Symmetric Connectionist Networks.

Simon Kasif, Saibal Banerjee, Arthur L. Delcher, Gregory F. Sullivan

Ann. Math. Artif. Intell., 1993

Protein Secondary-Structure Modeling with Probabilistic Networks.

Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu

Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993

Induction of Oblique Decision Trees.

David G. Heath, Simon Kasif, Steven Salzberg

Proceedings of the 13th International Joint Conference on Artificial Intelligence. Chambéry, France, August 28, 1993

OC1: A Randomized Induction of Oblique Decision Trees.

Sreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel

Proceedings of the 11th National Conference on Artificial Intelligence. Washington, 1993

Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract).

Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu

Proceedings of the 11th National Conference on Artificial Intelligence. Washington, 1993

1992

Efficient Parallel Term Matching and Anti-Unification.

Arthur L. Delcher, Simon Kasif

J. Autom. Reason., 1992

Improved Decision-Making in Game Trees: Recovering from Pathology.

Arthur L. Delcher, Simon Kasif

Proceedings of the 10th National Conference on Artificial Intelligence, 1992

1991

Learning with a Helpful Teacher.

Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif

Proceedings of the 12th International Joint Conference on Artificial Intelligence. Sydney, 1991

1990

On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks.

Simon Kasif

Artif. Intell., 1990

1989

Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs.

Arthur L. Delcher, Simon Kasif

J. Log. Program., 1989

Parallel Solutions to Constraint Satisfaction Problems.

Simon Kasif

Proceedings of the 1st International Conference on Principles of Knowledge Representation and Reasoning (KR'89). Toronto, 1989

1986

Control and data driven execution of logic programs: A comparison.

Simon Kasif

Int. J. Parallel Program., 1986

On the Parallel Complexity of Some Constraint Satisfaction Problems.

Simon Kasif

Proceedings of the 5th National Conference on Artificial Intelligence. Philadelphia, 1986

1985

The Intelligent Channel: A Scheme for Result Sharing in Logic Programs.

Simon Kasif, Jack Minker

Proceedings of the 9th International Joint Conference on Artificial Intelligence. Los Angeles, 1985

1983

Pyramid linking is a special case of ISODATA.

Simon Kasif, Azriel Rosenfeld

IEEE Trans. Syst. Man Cybern., 1983

A hough transform technique for subgraph isomorphism.

Simon Kasif, Les Kitchen, Azriel Rosenfeld

Pattern Recognit. Lett., 1983

PRISM - A Parallel Inference System for Problem Solving.

Simon Kasif, Madhur Kohli, Jack Minker

Proceedings of the Logic Programming Workshop '83, Praia da Falésia, Algarve, Portugal, 26 June, 1983

1982

Logic Programming on ZMOB: A Highly Parallel Machine.

Upen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao

Proceedings of the International Conference on Parallel Processing, 1982

Logic Programming: A Parallel Approach.

Norbert Eisinger, Simon Kasif, Jack Minker

Proceedings of the First International Logic Programming Conference, 1982