Simon D. W. Frost

According to our database, Simon D. W. Frost authored at least 14 papers between 2005 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

genieR: An R package for inference of demographic history of phylogenies.

Fei Xiang, Bethany L. Dearlove, Simon D. W. Frost

J. Open Source Softw., 2019

2016

Gillespie.jl: Stochastic Simulation Algorithm in Julia.

Simon D. W. Frost

J. Open Source Softw., 2016

2015

Measuring Asymmetry in Time-Stamped Phylogenies.

Bethany L. Dearlove, Simon D. W. Frost

PLoS Comput. Biol., 2015

2013

Inferring the Source of Transmission with Phylogenetic Data.

Erik M. Volz, Simon D. W. Frost

PLoS Comput. Biol., 2013

2012

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection.

Erik M. Volz, James S. Koopman, Melissa J. Ward, Andrew J. Leigh Brown, Simon D. W. Frost

PLoS Comput. Biol., 2012

2010

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology.

Wayne Delport, Art F. Y. Poon, Simon D. W. Frost, Sergei L. Kosakovsky Pond

Bioinform., 2010

2009

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1.

Sergei L. Kosakovsky Pond, David Posada, Eric W. Stawiski, Colombe Chappey, Art F. Y. Poon, Gareth Hughes, Esther Fearnhill, Mike B. Gravenor, Andrew J. Leigh Brown, Simon D. W. Frost

PLoS Comput. Biol., 2009

2008

Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models.

Art F. Y. Poon, Fraser I. Lewis, Simon D. W. Frost, Sergei L. Kosakovsky Pond

Bioinform., 2008

2007

An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope.

Art F. Y. Poon, Fraser I. Lewis, Sergei L. Kosakovsky Pond, Simon D. W. Frost

PLoS Comput. Biol., 2007

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope.

Art F. Y. Poon, Fraser I. Lewis, Sergei L. Kosakovsky Pond, Simon D. W. Frost

PLoS Comput. Biol., 2007

2006

Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses.

Sergei L. Kosakovsky Pond, Simon D. W. Frost, Zehava Grossman, Michael B. Gravenor, Douglas D. Richman, Andrew J. Leigh Brown

PLoS Comput. Biol., 2006

GARD: a genetic algorithm for recombination detection.

Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost

Bioinform., 2006

2005

HyPhy: hypothesis testing using phylogenies.

Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse

Bioinform., 2005

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.

Sergei L. Kosakovsky Pond, Simon D. W. Frost

Bioinform., 2005