Simin He

According to our database, Simin He authored at least 32 papers between 1999 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework.

Hao Yang, Hao Chi, Wen-Feng Zeng, Wen-Jing Zhou, Si-Min He

Bioinform., 2019

2015

A note on the false discovery rate of novel peptides in proteogenomics.

Kun Zhang, Yan Fu, Wen-Feng Zeng, Kun He, Hao Chi, Chao Liu, Yan-Chang Li, Yuan Gao, Ping Xu, Si-Min He

Bioinform., 2015

2012

Preliminary Search Engine for Open Protein Identification.

Wenli Zhang, Hao Chi, Yuanzheng Lu, Yuqing Huang, Xiaofang Zhao, Simin He

Proceedings of the 13th International Conference on Parallel and Distributed Computing, 2012

2010

Speeding up tandem mass spectrometry-based database searching by longest common prefix.

Chen Zhou, Hao Chi, Leheng Wang, You Li, Yan-Jie Wu, Yan Fu, Ruixiang Sun, Si-Min He

BMC Bioinform., 2010

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate.

Ding Ye, Yan Fu, Ruixiang Sun, Haipeng Wang, Zuofei Yuan, Hao Chi, Si-Min He

Bioinform., 2010

2009

Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences.

Yan Fu, Wei Jia, Zhuang Lu, Haipeng Wang, Zuofei Yuan, Hao Chi, You Li, Liyun Xiu, Wenping Wang, Chao Liu, Leheng Wang, Ruixiang Sun, Wen Gao, Xiaohong Qian, Si-Min He

BMC Bioinform., 2009

2008

On guaranteed smooth switching for buffered crossbar switches.

Simin He, Shutao Sun, Hong-Tao Guan, Qiang Zheng, Youjian Zhao, Wen Gao

IEEE/ACM Trans. Netw., 2008

FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.

Xiang Chen, Simin He, Dongbo Bu, Fa Zhang, Zhiyong Wang, Runsheng Chen, Wen Gao

Bioinform., 2008

2007

Mining Tandem Mass Spectral Data to Develop a More Accurate Mass Error Model for Peptide Identification.

Yan Fu, Wen Gao, Simin He, Ruixiang Sun, Hu Zhou, Rong Zeng

Proceedings of the Biocomputing 2007, 2007

Practical Algorithms of Bandwidth Regulation for Rate-Based Switching.

Yi Wang, Simin He, Youjian Zhao, Qiang Zheng, Wen Gao

Proceedings of the Global Communications Conference, 2007

A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots.

Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, Wen Gao

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Throughput analysis of a buffered crossbar switch with multiple input queues under burst traffic.

Shutao Sun, Simin He, Wen Gao

IEEE Commun. Lett., 2006

IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics.

Dequan Li, Wen Gao, Charles X. Ling, Xiaobiao Wang, Ruixiang Sun, Simin He

Bioinform., 2006

An SVM Scorer for More Sensitive and Reliable Peptide Identification via Tandem Mass Spectrometry.

Haipeng Wang, Yan Fu, Ruixiang Sun, Simin He, Rong Zeng, Wen Gao

Proceedings of the Biocomputing 2006, 2006

Switch Simulations Based on Workload Pattern Generation and Smoothed Periodic Input.

Qiang Zheng, Simin He, Shutao Sun, Yanfeng Zheng, Wen Gao

Proceedings of the 15th International Conference On Computer Communications and Networks, 2006

2005

Predicting Molecular Formulas of Fragment Ions with Isotope Patterns in Tandem Mass Spectra.

Jingfen Zhang, Wen Gao, Jinjin Cai, Simin He, Rong Zeng, Runsheng Chen

IEEE ACM Trans. Comput. Biol. Bioinform., 2005

Real-time smoothing for network adaptive video streaming.

Kui Gao, Wen Gao, Simin He, Yuan Zhang

J. Vis. Commun. Image Represent., 2005

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Dequan Li, Yan Fu, Ruixiang Sun, Charles X. Ling, Yonggang Wei, Hu Zhou, Rong Zeng, Qiang Yang, Simin He, Wen Gao

Bioinform., 2005

Smooth switching problem in buffered crossbar switches.

Simin He, Shutao Sun, Wei Zhao, Yanfeng Zheng, Wen Gao

Proceedings of the International Conference on Measurements and Modeling of Computer Systems, 2005

Parallelized scheduling algorithm for input queued switches using local search technique.

Yanfeng Zheng, Simin He, Shutao Sun, Wen Gao

Proceedings of the 24th IEEE International Performance Computing and Communications Conference, 2005

Scheduling Algorithms for Input Queued Switches Using Local Search Technique.

Yanfeng Zheng, Simin He, Shutao Sun, Wen Gao

Proceedings of the Networking, 2005

2004

A block-based support vector machine approach to the protein homology prediction task in KDD Cup 2004.

Yan Fu, Ruixiang Sun, Qiang Yang, Simin He, Chunli Wang, Haipeng Wang, Shiguang Shan, Junfa Liu, Wen Gao

SIGKDD Explor., 2004

Real-time scheduling based on imprecise computation for scalable streaming media system over the Internet.

Kui Gao, Wen Gao, Simin He, Yuan Zhang

Real Time Imaging, 2004

Online smoothing for scalable media stream delivery.

Kui Gao, Wen Gao, Simin He, Yuan Zhang

Proceedings of the Visual Communications and Image Processing 2004, 2004

A Kernel-Based Case Retrieval Algorithm with Application to Bioinformatics.

Yan Fu, Qiang Yang, Charles X. Ling, Haipeng Wang, Dequan Li, Ruixiang Sun, Hu Zhou, Rong Zeng, Yiqiang Chen, Simin He, Wen Gao

Proceedings of the PRICAI 2004: Trends in Artificial Intelligence, 2004

Multiple-threshold based scheduling algorithm for high performance input queued switches.

Shutao Sun, Simin He, Yanfeng Zheng, Wen Gao

Proceedings of the 12th IEEE International Conference on Networks, 2004

Distributed load adaptive scheduling for high speed input queued switch.

Shutao Sun, Youjian Zhao, Simin He, Yanfeng Zheng, Wen Gao

Proceedings of the Global Telecommunications Conference, 2004. GLOBECOM '04, Dallas, Texas, USA, 29 November, 2004

2003

Real-time scheduling and online resource allocation on scalable streaming media server.

Kui Gao, Wen Gao, Simin He, Yuan Zhang

Proceedings of the Visual Communications and Image Processing 2003, 2003

Multiscale load adaptive scheduling for energy efficient transmission over wireless networks.

Shutao Sun, Simin He, Wen Gao, Bin Pang

Proceedings of the IEEE 14th International Symposium on Personal, 2003

Real-time scheduling supporting VCR functionality for scalable video streaming.

Kui Gao, Yuan Zhang, Wen Gao, Simin He

Proceedings of the IEEE 14th International Symposium on Personal, 2003

Real-time scheduling on scalable media stream delivery.

Kui Gao, Wen Gao, Simin He, Peng Gao, Yuan Zhang

Proceedings of the 2003 International Symposium on Circuits and Systems, 2003

1999

Solving SAT by algorithm transform of Wu's method.

Simin He, Bo Zhang

J. Comput. Sci. Technol., 1999