Shu-Dong Zhang

According to our database, Shu-Dong Zhang authored at least 11 papers between 2004 and 2017.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2017

An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping.

Gayathri Thillaiyampalam, Fabio Liberante, Liam Murray, Chris Cardwell, Ken I. Mills, Shu-Dong Zhang

BMC Bioinform., 2017

A review of connectivity map and computational approaches in pharmacogenomics.

Aliyu Musa, Laleh Soltan Ghoraie, Shu-Dong Zhang, Galina V. Glazko, Olli Yli-Harja, Matthias Dehmer, Benjamin Haibe-Kains, Frank Emmert-Streib

Briefings Bioinform., 2017

2016

A gene-signature progression approach to identifying candidate small-molecule cancer therapeutics with connectivity mapping.

Qing Wen, Chang Sik Kim, Peter Hamilton, Shu-Dong Zhang

BMC Bioinform., 2016

QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics.

Paul G. O'Reilly, Qing Wen, Peter Bankhead, Philip D. Dunne, Darragh G. McArt, Suzanne McPherson, Peter Hamilton, Ken I. Mills, Shu-Dong Zhang

BMC Bioinform., 2016

2014

Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures.

Chang Sik Kim, Qing Wen, Shu-Dong Zhang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

RMA with quantile normalization mixes biological signals between different sample groups in microarray data analysis.

Chang Sik Kim, Seungwoo Hwang, Shu-Dong Zhang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

cudaMap: a GPU accelerated program for gene expression connectivity mapping.

Darragh G. McArt, Peter Bankhead, Philip D. Dunne, Manuel Salto-Tellez, Peter Hamilton, Shu-Dong Zhang

BMC Bioinform., 2013

2009

sscMap: An extensible Java application for connecting small-molecule drugs using gene-expression signatures.

Shu-Dong Zhang, Timothy W. Gant

BMC Bioinform., 2009

2008

A simple and robust method for connecting small-molecule drugs using gene-expression signatures.

Shu-Dong Zhang, Timothy W. Gant

BMC Bioinform., 2008

2005

Effect of pooling samples on the efficiency of comparative studies using microarrays.

Shu-Dong Zhang, Timothy W. Gant

Bioinform., 2005

2004

A statistical framework for the design of microarray experiments and effective detection of differential gene expression.

Shu-Dong Zhang, Timothy W. Gant

Bioinform., 2004