Shilin Zhao

According to our database, Shilin Zhao authored at least 32 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

How Good Are We? Evaluating Cell AI Foundation Models in Kidney Pathology with Human-in-the-Loop Enrichment.

Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao, Yizhe Lin, Marilyn Lionts, Quan Liu, Juming Xiong, Yu Wang, Shilin Zhao, Catie Chang, Mitchell Wilkes, Mengmeng Yin, Haichun Yang, Yuankai Huo

CoRR, 2024

Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology.

Junchao Zhu, Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo

CoRR, 2024

Adapting Mouse Pathological Model to Human Glomerular Lesion Segmentation.

Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo

CoRR, 2024

HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis.

Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation.

Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong, Lining Yu, Yifei Wu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2023

Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation.

Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo

IEEE Trans. Biomed. Eng., September, 2023

Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers.

Muhao Liu, Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo

CoRR, 2023

Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology.

Jiayuan Chen, Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Yilin Liu, Jianyong Zhong, Agnes B. Fogo, Haichun Yang, Shilin Zhao, Yuankai Huo

CoRR, 2023

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging.

Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Lee E. Wheless, Lori A. Coburn, Keith T. Wilson, Yaohong Wang, Shilin Zhao, Agnes B. Fogo, Haichun Yang, Yucheng Tang, Yuankai Huo

CoRR, 2023

2022

Partial Discharge Localization on Power Cables Based on a Novel Signal Relay System.

Kai Zhou, Yao Fu, Guangya Zhu, Shilin Zhao, Lu Lu, Xianjin Wang, Yuan Li, Pengfei Meng, Shiyu Ma

IEEE Trans. Instrum. Meas., 2022

Multimodality in meta-learning: A comprehensive survey.

Yao Ma, Shilin Zhao, Weixiao Wang, Yaoman Li, Irwin King

Knowl. Based Syst., 2022

Omni-Seg+: A Scale-aware Dynamic Network for Pathological Image Segmentation.

Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo

CoRR, 2022

Deep Multi-modal Fusion of Image and Non-image Data in Disease Diagnosis and Prognosis: A Review.

Can Cui, Haichun Yang, Yaohong Wang, Shilin Zhao, Zuhayr Asad, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo

CoRR, 2022

Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data.

Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo

CoRR, 2022

Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data.

Shih-Kai Chu, Shilin Zhao, Yu Shyr, Qi Liu

Briefings Bioinform., 2022

Ultra-Low-Loss Graphene Coated Optical Fiber Polarizer with PMMA Enhancement.

Jianwei Li, Xinwei Deng, Shilin Zhao, Ziyu Wang, Xinyue Wang

Proceedings of the 2022 27th OptoElectronics and Communications Conference (OECC) and 2022 International Conference on Photonics in Switching and Computing (PSC), 2022

Integrate memory efficiency methods for self-supervised learning on pathological image analysis.

Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo

Proceedings of the Medical Imaging 2022: Image Processing, 2022

Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data.

Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data.

Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo

Proceedings of the Medical Imaging 2022: Computer-Aided Diagnosis, San Diego, 2022

MAG: A Simple Learning-Based Patient-Level Aggregation Method for Detecting Microsatellite Instability from Whole-Slide Images.

Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo

Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

2021

SimTriplet: Simple Triplet Representation Learning with a Single GPU.

Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Beds: Bagging Ensemble Deep Segmentation For Nucleus Segmentation With Testing Stage Stain Augmentation.

Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020

Non-canonical RNA-DNA differences and other human genomic features are enriched within very short tandem repeats.

Hui Yu, Shilin Zhao, Scott Ness, Huining Kang, Quanhu Sheng, David C. Samuels, Olufunmilola Oyebamiji, Ying-Yong Zhao, Yan Guo

PLoS Comput. Biol., 2020

2019

Traffic Classification and Application Identification Based on Machine Learning in Large-Scale Supercomputing Center.

Shilin Zhao, Kejiang Ye, Cheng-Zhong Xu

Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019

2018

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing.

Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

BMC Bioinform., 2018

Strategies for processing and quality control of Illumina genotyping arrays.

Shilin Zhao, Jing Wang, David C. Samuels, Quanghu Sheng, Yu Shyr, Yan Guo

Briefings Bioinform., 2018

2017

Robust Object Tracking Based on Collaborative Sparse Representation of Multifeature.

Shilin Zhao, Ming Li, Xinli Yang

Proceedings of the 3rd International Conference on Robotics and Artificial Intelligence, 2017

Facial Expression Recognition Algorithm Based on CNN and LBP Feature Fusion.

Xinli Yang, Ming Li, Shilin Zhao

Proceedings of the 3rd International Conference on Robotics and Artificial Intelligence, 2017

2015

NGSPERL: a semi-automated framework for large scale next generation sequencing data analysis.

Quanhu Sheng, Shilin Zhao, Mingsheng Guo, Yu Shyr

Int. J. Comput. Biol. Drug Des., 2015

2014

Heatmap3: an improved heatmap package with more powerful and convenient features.

Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr

BMC Bioinform., 2014

Detection of internal exon deletion with exon Del.

Yan Guo, Shilin Zhao, Brian D. Lehmann, Quanhu Sheng, Timothy M. Shaver, Thomas Stricker, Jennifer A. Pietenpol, Yu Shyr

BMC Bioinform., 2014

2013

Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma.

Qi Liu, Shilin Zhao, Pei-Fang Su, Shyr Yu

BMC Syst. Biol., 2013