Shila Ghazanfar

According to our database, Shila Ghazanfar authored at least 8 papers between 2016 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

<i>MoleculeExperiment</i> enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor.

Bárbara Zita Peters Couto, Nicholas Robertson, Ellis Patrick, Shila Ghazanfar

Bioinform., September, 2023

Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data.

Yue Cao, Shila Ghazanfar, Pengyi Yang, Jean Y. H. Yang

Briefings Bioinform., May, 2023

2022

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.

Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso

Bioinform., 2022

2019

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson

Nat., 2019

DCARS: differential correlation across ranked samples.

Shila Ghazanfar, Dario Strbenac, John T. Ormerod, Jean Yee Hwa Yang, Ellis Patrick

Bioinform., 2019

2017

Statistical approaches to harness high throughput sequencing data in diverse biological systems.

Shila Ghazanfar

PhD thesis, 2017

2016

Characterizing mutation-expression network relationships in multiple cancers.

Shila Ghazanfar, Jean Yee Hwa Yang

Comput. Biol. Chem., 2016

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers.

Shila Ghazanfar, Adam J. Bisogni, John T. Ormerod, David M. Lin, Jean Yee Hwa Yang

BMC Syst. Biol., 2016