Sharmila S. Mande

Orcid: 0000-0002-2614-1982

According to our database1, Sharmila S. Mande authored at least 20 papers between 2007 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2024
BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text.
Comput. Biol. Chem., 2024

2023
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text.
CoRR, 2023

2021
NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams.
Bioinform., 2021

Utilizing domain-based features to improve classification accuracy of biomedical text having bacterial associations.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks.
Nucleic Acids Res., 2020

FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information.
Bioinform., 2020

2019
Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks.
BMC Bioinform., 2019

2017
Web-igloo: a web based platform for multivariate data visualization.
Bioinform., 2017

2016
CompNet: a GUI based tool for comparison of multiple biological interaction networks.
BMC Bioinform., 2016

2015
Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.
J. Bioinform. Comput. Biol., 2015

FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets.
J. Bioinform. Comput. Biol., 2015

2012
DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis.
Bioinform., 2012

Classification of metagenomic sequences: methods and challenges.
Briefings Bioinform., 2012

2011
HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences.
BMC Bioinform., 2011

SPHINX - an algorithm for taxonomic binning of metagenomic sequences.
Bioinform., 2011

2010
DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences.
BMC Bioinform., 2010

2009
Mathematical Modeling of Regulation of Type III Secretion System in Salmonella enterica Serovar Typhimurium by SirA.
Silico Biol., 2009

SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences.
Bioinform., 2009

2008
The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes.
IEEE Trans. Autom. Control., 2008

2007
Identification of compositionally distinct regions in genomes using the centroid method.
Bioinform., 2007


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