Shaoyong Lu

According to our database, Shaoyong Lu authored at least 15 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

AlloReverse: multiscale understanding among hierarchical allosteric regulations.

Jinyin Zha, Qian Li, Xinyi Liu, Weidong Lin, Tingting Wang, Jiacheng Wei, Ziliang Zhang, Xun Lu, Jing Wu, Duan Ni, Kun Song, Liang Zhang, Xuefeng Lu, Shaoyong Lu, Jian Zhang

Nucleic Acids Res., July, 2023

2022

Markov State Models and Molecular Dynamics Simulations Reveal the Conformational Transition of the Intrinsically Disordered Hypervariable Region of K-Ras4B to the Ordered Conformation.

Hao Zhang, Duan Ni, Jigang Fan, Minyu Li, Jian Zhang, Chen Hua, Ruth Nussinov, Shaoyong Lu

J. Chem. Inf. Model., 2022

2020

Unraveling allosteric landscapes of allosterome with ASD.

Xinyi Liu, Shaoyong Lu, Kun Song, Qiancheng Shen, Duan Ni, Qian Li, Xinheng He, Hao Zhang, Qi Wang, Yingyi Chen, Xinyi Li, Jing Wu, Chunquan Sheng, Guoqiang Chen, Yaqin Liu, Xuefeng Lu, Jian Zhang

Nucleic Acids Res., 2020

2019

AlloDriver: a method for the identification and analysis of cancer driver targets.

Kun Song, Qian Li, Wei Gao, Shaoyong Lu, Qiancheng Shen, Xinyi Liu, Yongyan Wu, Binquan Wang, Houwen Lin, Guoqiang Chen, Jian Zhang

Nucleic Acids Res., 2019

Are the Apo Proteins Suitable for the Rational Discovery of Allosteric Drugs?

Xiaoli An, Shaoyong Lu, Kun Song, Qiancheng Shen, Meilan Huang, Xiaojun Yao, Huanxiang Liu, Jian Zhang

J. Chem. Inf. Model., 2019

2018

AlloFinder: a strategy for allosteric modulator discovery and allosterome analyses.

Min Huang, Kun Song, Xinyi Liu, Shaoyong Lu, Qiancheng Shen, Renxiao Wang, Jingze Gao, Yuanyuan Hong, Qian Li, Duan Ni, Jianrong Xu, Guoqiang Chen, Jian Zhang

Nucleic Acids Res., 2018

2017

Improved Method for the Identification and Validation of Allosteric Sites.

Kun Song, Xinyi Liu, Wenkang Huang, Shaoyong Lu, Qiancheng Shen, Lu Zhang, Jian Zhang

J. Chem. Inf. Model., September, 2017

2016

ASD v3.0: unraveling allosteric regulation with structural mechanisms and biological networks.

Qiancheng Shen, Guanqiao Wang, Shuai Li, Xinyi Liu, Shaoyong Lu, Zhongjie Chen, Kun Song, Junhao Yan, Lv Geng, Zhimin Huang, Wenkang Huang, Guoqiang Chen, Jian Zhang

Nucleic Acids Res., 2016

Alloscore: a method for predicting allosteric ligand-protein interactions.

Shuai Li, Qiancheng Shen, Minyi Su, Xinyi Liu, Shaoyong Lu, Zhongjie Chen, Renxiao Wang, Jian Zhang

Bioinform., 2016

2015

ASBench: benchmarking sets for allosteric discovery.

Wenkang Huang, Guanqiao Wang, Qiancheng Shen, Xinyi Liu, Shaoyong Lu, Lv Geng, Zhimin Huang, Jian Zhang

Bioinform., 2015

2014

The Structural Basis of ATP as an Allosteric Modulator.

Shaoyong Lu, Wenkang Huang, Qi Wang, Qiancheng Shen, Shuai Li, Ruth Nussinov, Jian Zhang

PLoS Comput. Biol., 2014

ASD v2.0: updated content and novel features focusing on allosteric regulation.

Zhimin Huang, Linkai Mou, Qiancheng Shen, Shaoyong Lu, Chuangang Li, Xinyi Liu, Guanqiao Wang, Shuai Li, Lv Geng, Yaqin Liu, Jiawei Wu, Guoqiang Chen, Jian Zhang

Nucleic Acids Res., 2014

2013

Exploring the Desumoylation Process of SENP1: A Study Combined MD Simulations with QM/MM Calculations on SENP1-SUMO1-RanGAP1.

Ting Shi, Yuhui Han, Weihua Li, Yanlong Zhao, Yaqin Liu, Zhimin Huang, Shaoyong Lu, Jian Zhang

J. Chem. Inf. Model., 2013

Allosite: a method for predicting allosteric sites.

Wenkang Huang, Shaoyong Lu, Zhimin Huang, Xinyi Liu, Linkai Mou, Yu Luo, Yanlong Zhao, Yaqin Liu, Zhongjie Chen, Tingjun Hou, Jian Zhang

Bioinform., 2013

2012

Insights into the Role of Magnesium Triad in <i>myo</i>-Inositol Monophosphatase: Metal Mechanism, Substrate Binding, and Lithium Therapy.

Shaoyong Lu, Wenkang Huang, Xiaobai Li, Zhimin Huang, Xinyi Liu, Yingyi Chen, Ting Shi, Jian Zhang

J. Chem. Inf. Model., 2012