Shane Canon

According to our database, Shane Canon authored at least 29 papers between 2001 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2022

Scaling Podman on Perlmutter: Embracing a community-supported container ecosystem.

Laurie Stephey, Shane Canon, Aditi Gaur, Daniel Fulton, Andrew J. Younge

Proceedings of the 4th IEEE/ACM International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC, 2022

2021

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum).

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry

Nucleic Acids Res., 2021

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry

Nucleic Acids Res., 2021

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.

Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Fnu Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais Player Jackson, Julia Kelliher, Po-E Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain

Frontiers Bioinform., 2021

Minimizing privilege for building HPC containers.

Reid Priedhorsky, Shane Richard Canon, Timothy Randles, Andrew J. Younge

Proceedings of the International Conference for High Performance Computing, 2021

Leveraging Ontologies within the National Microbiome Data Collaborative.

William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

Enabling discovery data science through cross-facility workflows.

Katerina B. Antypas, Deborah Bard, Johannes P. Blaschke, Shane Richard Canon, Bjoern Enders, Mallikarjun Arjun Shankar, Suhas Somnath, Dale Stansberry, Thomas D. Uram, Sean R. Wilkinson

Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2020

The Role of Containers in Reproducibility.

Shane Richard Canon

Proceedings of the 2nd International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC, 2020

2018

Interactive Distributed Deep Learning with Jupyter Notebooks.

Steven Andrew Farrell, Aaron Vose, Oliver Evans, Matthew L. Henderson, Shreyas Cholia, Fernando Pérez, Wahid Bhimji, Shane Canon, Rollin C. Thomas, Prabhat

Proceedings of the High Performance Computing, 2018

Enhancing supercomputing with software defined networking.

Jason R. Lee, Shane Richard Canon, Tina Declerck, Brent Draney, David Paul, David Skinner

Proceedings of the 2018 International Conference on Information Networking, 2018

2017

Special Issue on Data-Intensive Scalable Computing Systems.

Philip C. Roth, Shane Richard Canon

Parallel Comput., 2017

2016

Matrix Factorization at Scale: a Comparison of Scientific Data Analytics in Spark and C+MPI Using Three Case Studies.

Alex Gittens, Aditya Devarakonda, Evan Racah, Michael F. Ringenburg, Lisa Gerhardt, Jey Kottalam, Jialin Liu, Kristyn J. Maschhoff, Shane Canon, Jatin Chhugani, Pramod Sharma, Jiyan Yang, James Demmel, Jim Harrell, Venkat Krishnamurthy, Michael W. Mahoney, Prabhat

CoRR, 2016

Scaling Spark on HPC Systems.

Nicholas Chaimov, Allen D. Malony, Shane Canon, Costin Iancu, Khaled Z. Ibrahim, Jay Srinivasan

Proceedings of the 25th ACM International Symposium on High-Performance Parallel and Distributed Computing, 2016

Matrix factorizations at scale: A comparison of scientific data analytics in spark and C+MPI using three case studies.

Alex Gittens, Aditya Devarakonda, Evan Racah, Michael F. Ringenburg, Lisa Gerhardt, Jey Kottalam, Jialin Liu, Kristyn J. Maschhoff, Shane Canon, Jatin Chhugani, Pramod Sharma, Jiyan Yang, James Demmel, Jim Harrell, Venkat Krishnamurthy, Michael W. Mahoney, Prabhat

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

2014

Cori: A Pre-Exascale Supercomputer for Big Data and HPC Applications.

Nicholas J. Wright, Sudip S. Dosanjh, Allison K. Andrews, Katerina B. Antypas, Brent Draney, Shane Canon, Shreyas Cholia, Christopher S. Daley, Kirsten M. Fagnan, Richard A. Gerber, Lisa Gerhardt, Larry Pezzaglia, Karen H. Schafer, Jay Srinivasan

Proceedings of the Big Data and High Performance Computing, 2014

2013

Extreme Data Science at the National Energy Research Scientific Computing (NERSC) Center.

Sudip S. Dosanjh, Shane Canon, Jack Deslippe, Kjiersten Fagnan, Richard A. Gerber, Lisa Gerhardt, Jason Hick, Douglas Jacobsen, David Skinner, Nicholas J. Wright

Proceedings of the Parallel Computing: Accelerating Computational Science and Engineering (CSE), 2013

Performance evaluation of a MongoDB and hadoop platform for scientific data analysis.

Elif Dede, Madhusudhan Govindaraju, Daniel K. Gunter, Shane Richard Canon, Lavanya Ramakrishnan

Proceedings of the ScienceCloud'13, 2013

Milieu: Lightweight and Configurable Big Data Provenance for Science.

You-Wei Cheah, Shane Richard Canon, Beth Plale, Lavanya Ramakrishnan

Proceedings of the IEEE International Congress on Big Data, 2013

2012

Evaluating Interconnect and Virtualization Performance forHigh Performance Computing.

Lavanya Ramakrishnan, Shane Richard Canon, Krishna Muriki, Iwona Sakrejda, Nicholas J. Wright

SIGMETRICS Perform. Evaluation Rev., 2012

MARISSA: MApReduce Implementation for Streaming Science Applications.

Elif Dede, Zacharia Fadika, Jessica Hartog, Madhusudhan Govindaraju, Lavanya Ramakrishnan, Dan Gunter, Shane Richard Canon

Proceedings of the 8th IEEE International Conference on E-Science, 2012

Evaluating Hadoop for Data-Intensive Scientific Operations.

Zacharia Fadika, Madhusudhan Govindaraju, Shane Richard Canon, Lavanya Ramakrishnan

Proceedings of the 2012 IEEE Fifth International Conference on Cloud Computing, 2012

2010

Multi-level bitmap indexes for flash memory storage.

Kesheng Wu, Kamesh Madduri, Shane Canon

Proceedings of the Fourteenth International Database Engineering and Applications Symposium (IDEAS 2010), 2010

Performance Analysis of High Performance Computing Applications on the Amazon Web Services Cloud.

Keith R. Jackson, Lavanya Ramakrishnan, Krishna Muriki, Shane Canon, Shreyas Cholia, John Shalf, Harvey J. Wasserman, Nicholas J. Wright

Proceedings of the Cloud Computing, Second International Conference, 2010

Defining future platform requirements for e-Science clouds.

Lavanya Ramakrishnan, Keith R. Jackson, Shane Canon, Shreyas Cholia, John Shalf

Proceedings of the 1st ACM Symposium on Cloud Computing, 2010

2008

Empirical Analysis of a Large-Scale Hierarchical Storage System.

Weikuan Yu, Sarp Oral, Shane Canon, Jeffrey S. Vetter, Ramanan Sankaran

Proceedings of the Euro-Par 2008, 2008

2007

Exploiting Lustre File Joining for Effective Collective IO.

Weikuan Yu, Jeffrey S. Vetter, Shane Canon, Song Jiang

Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 2007

2004

The Grid2003 Production Grid: Principles and Practice.

Ian T. Foster, Jerry Gieraltowski, Scott Gose, Natalia Maltsev, Edward N. May, Alex A. Rodriguez, Dinanath Sulakhe, A. Vaniachine, Jim Shank, Saul Youssef, David Adams, Richard Baker, Wensheng Deng, Jason Smith, Dantong Yu, Iosif Legrand, Suresh Singh, Conrad Steenberg, Yang Xia, M. Anzar Afaq, Eileen Berman, James Annis, L. A. T. Bauerdick, Michael Ernst, Ian Fisk, Lisa Giacchetti, Gregory E. Graham, Anne Heavey, Joseph Kaiser, Nickolai Kuropatkin, Ruth Pordes, Vijay Sekhri, John Weigand, Yujun Wu, Keith Baker, Lawrence Sorrillo, John Huth, Matthew Allen, Leigh Grundhoefer, John Hicks, Fred Luehring, Steve Peck, Robert Quick, Stephen C. Simms, George Fekete, Jan vandenBerg, Kihyeon Cho, Kihwan Kwon, Dongchul Son, Hyoungwoo Park, Shane Canon, Keith R. Jackson, David E. Konerding, Jason Lee, Doug Olson, Iwona Sakrejda, Brian Tierney, Mark Green, Russ Miller, James Letts, Terrence Martin, David Bury, Catalin Dumitrescu, Daniel Engh, Robert W. Gardner, Marco Mambelli, Yuri Smirnov, Jens-S. Vöckler, Michael Wilde, Yong Zhao, Xin Zhao, Paul Avery, Richard Cavanaugh, Bockjoo Kim, Craig Prescott, Jorge Luis Rodriguez, Andrew Zahn, Shawn McKee, Christopher T. Jordan, James E. Prewett, Timothy L. Thomas, Horst Severini, Ben Clifford, Ewa Deelman, Larry Flon, Carl Kesselman, Gaurang Mehta, Nosa Olomu, Karan Vahi, Kaushik De, Patrick McGuigan, Mark Sosebee, Dan Bradley, Peter Couvares, Alan DeSmet, Carey Kireyev, Erik Paulson, Alain Roy, Scott Koranda, Brian Moe, Bobby Brown, Paul Sheldon

Proceedings of the 13th International Symposium on High-Performance Distributed Computing (HPDC-13 2004), 2004

2003

Using CAS to Manage Role-Based VO Sub-Groups

Craig E. Tull, Shane Canon, Steve Chan, Doug Olson, Laura Pearlman, Von Welch

CoRR, 2003

2001

Monitoring Tools for Larger Sites.

Stephen Chan, Cary Whitney, Iwona Sakreja, Shane Canon

login Usenix Mag., 2001