Shane C. Burgess

According to our database, Shane C. Burgess authored at least 20 papers between 2007 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

Chickspress: a resource for chicken gene expression.

Fiona M. McCarthy, Ken Pendarvis, Amanda M. Cooksey, Cathy R. Gresham, Matt Bomhoff, Sean Davey, Eric Lyons, Tad S. Sonstegard, Susan M. Bridges, Shane C. Burgess

Database J. Biol. Databases Curation, 2019

2012

Nuclear Factor kappa B is central to Marek's Disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo.

Shyamesh Kumar, Dusan Kunec, Joram J. Buza, Hsin-I Chiang, Huaijun Zhou, Sugalesini Subramaniam, Ken Pendarvis, Hans H. Cheng, Shane C. Burgess

BMC Syst. Biol., 2012

Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213.

Joseph S. Reddy, Ranjit Kumar, James M. Watt, Mark L. Lawrence, Shane C. Burgess, Bindu Nanduri

BMC Bioinform., 2012

2011

Prediction of Cell Penetrating Peptides by Support Vector Machines.

William S. Sanders, C. Ian Johnston, Susan M. Bridges, Shane C. Burgess, Kenneth O. Willeford

PLoS Comput. Biol., 2011

AgBase: supporting functional modeling in agricultural organisms.

Fiona M. McCarthy, Cathy R. Gresham, Teresia J. Buza, Philippe Chouvarine, Lakshmi R. Pillai, Ranjit Kumar, Seval Ozkan, Hui Wang, Prashanti Manda, Tony Arick, Susan M. Bridges, Shane C. Burgess

Nucleic Acids Res., 2011

TAAPP: Tiling Array Analysis Pipeline for Prokaryotes.

Ranjit Kumar, Shane C. Burgess, Mark L. Lawrence, Bindu Nanduri

Genom. Proteom. Bioinform., 2011

The Proteogenomic Mapping Tool.

William S. Sanders, Nan Wang, Susan M. Bridges, Brandon M. Malone, Yoginder S. Dandass, Fiona M. McCarthy, Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess

BMC Bioinform., 2011

2010

GOModeler- A tool for hypothesis-testing of functional genomics datasets.

Prashanti Manda, McKinley G. Freeman, Susan M. Bridges, T. J. Jankun-Kelly, Bindu Nanduri, Fiona M. McCarthy, Shane C. Burgess

BMC Bioinform., 2010

Gene Model Detection Using Mass Spectrometry.

Bindu Nanduri, Nan Wang, Mark L. Lawrence, Susan M. Bridges, Shane C. Burgess

Proceedings of the Proteome Bioinformatics, 2010

2009

An automated proteomic data analysis workflow for mass spectrometry.

Ken Pendarvis, Ranjit Kumar, Shane C. Burgess, Bindu Nanduri

BMC Bioinform., 2009

Facilitating functional annotation of chicken microarray data.

Teresia J. Buza, Ranjit Kumar, Cathy R. Gresham, Shane C. Burgess, Fiona M. McCarthy

BMC Bioinform., 2009

Structural and functional-annotation of an equine whole genome oligoarray.

Lauren A. Bright, Shane C. Burgess, Bhanu Chowdhary, Cyprianna E. Swiderski, Fiona M. McCarthy

BMC Bioinform., 2009

<i>ArrayIDer</i>: automated structural re-annotation pipeline for DNA microarrays.

Bart H. J. van den Berg, Jay H. Konieczka, Fiona M. McCarthy, Shane C. Burgess

BMC Bioinform., 2009

Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes.

Nan Wang, Shane C. Burgess, Mark L. Lawrence, Susan Bridges

Proceedings of the International Joint Conferences on Bioinformatics, 2009

2008

Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility.

Divyaswetha Peddinti, Bindu Nanduri, Abdullah Kaya, Jean M. Feugang, Shane C. Burgess, Erdogan Memili

BMC Syst. Biol., 2008

Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research.

Yoginder S. Dandass, Shane C. Burgess, Mark L. Lawrence, Susan M. Bridges

BMC Bioinform., 2008

Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks.

Nan Wang, Changhe Yuan, Shane C. Burgess, Bindu Nanduri, Mark L. Lawrence, Susan Bridges

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007

AgBase: a unified resource for functional analysis in agriculture.

Fiona M. McCarthy, Susan M. Bridges, Nan Wang, G. Bryce Magee, W. Paul Williams, Dawn S. Luthe, Shane C. Burgess

Nucleic Acids Res., 2007

Prediction of peptides observable by mass spectrometry applied at the experimental set level.

William S. Sanders, Susan M. Bridges, Fiona M. McCarthy, Bindu Nanduri, Shane C. Burgess

BMC Bioinform., 2007

ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.

Susan M. Bridges, G. Bryce Magee, Nan Wang, W. Paul Williams, Shane C. Burgess, Bindu Nanduri

BMC Bioinform., 2007