Shan E Ahmed Raza

Orcid: 0000-0002-1097-1738

Affiliations:
  • University of Warwick, Department of Computer Science


According to our database1, Shan E Ahmed Raza authored at least 74 papers between 2012 and 2024.

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Bibliography

2024
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset.
IEEE J. Biomed. Health Informatics, March, 2024

CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting.
Medical Image Anal., February, 2024

Consistency regularisation in varying contexts and feature perturbations for semi-supervised semantic segmentation of histology images.
Medical Image Anal., January, 2024

Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures.
Medical Image Anal., 2024

An AI based Digital Score of Tumour-Immune Microenvironment Predicts Benefit to Maintenance Immunotherapy in Advanced Oesophagogastric Adenocarcinoma.
CoRR, 2024

TIAViz: A Browser-based Visualization Tool for Computational Pathology Models.
CoRR, 2024

Nuclei-Location Based Point Set Registration of Multi-stained Whole Slide Images.
Proceedings of the Medical Image Understanding and Analysis - 28th Annual Conference, 2024

An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

An Attention Based Pipeline for Identifying Pre-Cancer Lesions in Head and Neck Clinical Images.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Cell Maps Representation for Lung Adenocarcinoma Growth Patterns Classification in Whole Slide Images.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023
A Federated Learning Approach to Tumor Detection in Colon Histology Images.
J. Medical Syst., December, 2023



Handcrafted Histological Transformer (H2T): Unsupervised representation of whole slide images.
Medical Image Anal., April, 2023

Deep feature based cross-slide registration.
Comput. Medical Imaging Graph., March, 2023



One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification.
Medical Image Anal., 2023

Transformer-based Model for Oral Epithelial Dysplasia Segmentation.
CoRR, 2023

Domain Generalization in Computational Pathology: Survey and Guidelines.
CoRR, 2023

A Fully Automated and Explainable Algorithm for the Prediction of Malignant Transformation in Oral Epithelial Dysplasia.
CoRR, 2023

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting.
CoRR, 2023

LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset.
CoRR, 2023

Nuclear Segmentation and Classification: On Color & Compression Generalization.
CoRR, 2023

Growth Pattern Fingerprinting for Automatic Analysis of Lung Adenocarcinoma Overall Survival.
IEEE Access, 2023

2022








Stain-Robust Mitotic Figure Detection for MIDOG 2022 Challenge.
CoRR, 2022

TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge.
CoRR, 2022

Deep Learning based Prediction of MSI in Colorectal Cancer via Prediction of the Status of MMR Markers.
CoRR, 2022

A Novel Framework for Coarse-Grained Semantic Segmentation of Whole-Slide Images.
Proceedings of the Medical Image Understanding and Analysis - 26th Annual Conference, 2022

Nuclear Segmentation and Classification: On Color and Compression Generalization.
Proceedings of the Machine Learning in Medical Imaging - 13th International Workshop, 2022

Cross-Stream Interactions: Segmentation of Lung Adenocarcinoma Growth Patterns.
Proceedings of the Computational Mathematics Modeling in Cancer Analysis, 2022

Morph-Net: End-to-End Prediction of Nuclear Morphological Features from Histology Images.
Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022

2021

MoNuSAC2020: A Multi-Organ Nuclei Segmentation and Classification Challenge.
IEEE Trans. Medical Imaging, 2021

CoNIC: Colon Nuclei Identification and Counting Challenge 2022.
CoRR, 2021

FedDropoutAvg: Generalizable federated learning for histopathology image classification.
CoRR, 2021

Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations.
CoRR, 2021

A digital score of tumour-associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma.
CoRR, 2021

Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification.
Proceedings of the IEEE/CVF International Conference on Computer Vision Workshops, 2021

A Novel Cell Map Representation for Weakly Supervised Prediction of ER & PR Status from H&E WSIs.
Proceedings of the MICCAI Workshop on Computational Pathology, 2021

2020
Automated grade classification of oral epithelial dysplasia using morphometric analysis of histology images.
Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

HydraMix-Net: A Deep Multi-task Semi-supervised Learning Approach for Cell Detection and Classification.
Proceedings of the Interpretable and Annotation-Efficient Learning for Medical Image Computing, 2020

Cross-Domain Knowledge Transfer for Prediction of Chemosensitivity in Ovarian Cancer Patients.
Proceedings of the 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2020

2019
Micro-Net: A unified model for segmentation of various objects in microscopy images.
Medical Image Anal., 2019

Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images.
Medical Image Anal., 2019

Deconvolving Convolutional Neural Network for Cell Detection.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

2018
XY Network for Nuclear Segmentation in Multi-Tissue Histology Images.
CoRR, 2018

DeepSDCS: Dissecting cancer proliferation heterogeneity in Ki67 digital whole slide images.
CoRR, 2018

Deconvolving convolution neural network for cell detection.
CoRR, 2018

A bottom-up approach for tumour differentiation in whole slide images of lung adenocarcinoma.
Proceedings of the Medical Imaging 2018: Digital Pathology, 2018

2017
Multi-resolution cell orientation congruence descriptors for epithelium segmentation in endometrial histology images.
Medical Image Anal., 2017

MIMONet: Gland Segmentation Using Multi-Input-Multi-Output Convolutional Neural Network.
Proceedings of the Medical Image Understanding and Analysis - 21st Annual Conference, 2017

MIMO-Net: A multi-input multi-output convolutional neural network for cell segmentation in fluorescence microscopy images.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

2016
Locality Sensitive Deep Learning for Detection and Classification of Nuclei in Routine Colon Cancer Histology Images.
IEEE Trans. Medical Imaging, 2016

Robust normalization protocols for multiplexed fluorescence bioimage analysis.
BioData Min., 2016

Handcrafted features with convolutional neural networks for detection of tumor cells in histology images.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Stain deconvolution of histology images via independent component analysis in the wavelet domain.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015
Registration of thermal and visible light images of diseased plants using silhouette extraction in the wavelet domain.
Pattern Recognit., 2015

Cell Nuclei Segmentation in Variable Intensity Fluorescence Microscopy Images.
Proceedings of the Medical Image Understanding and Analysis, 2015

A Discriminative Framework for Stain Deconvolution of Histopathology Images in the Maxwellian Space.
Proceedings of the Medical Image Understanding and Analysis, 2015

Anisotropic tubular filtering for automatic detection of acid-fast bacilli in Ziehl-Neelsen stained sputum smear samples.
Proceedings of the Medical Imaging 2015: Digital Pathology, 2015

A Spatially Constrained Deep Learning Framework for Detection of Epithelial Tumor Nuclei in Cancer Histology Images.
Proceedings of the Patch-Based Techniques in Medical Imaging, 2015

A Novel Cell Orientation Congruence Descriptor for Superpixel Based Epithelium Segmentation in Endometrial Histology Images.
Proceedings of the Patch-Based Techniques in Medical Imaging, 2015

2014
Multi-variate image analysis for detection of biomedical anomalies.
PhD thesis, 2014

Cell phenotyping in multi-tag fluorescent bioimages.
Neurocomputing, 2014

2012
A Novel Paradigm for Mining Cell Phenotypes in Multi-tag Bioimages Using a Locality Preserving Nonlinear Embedding.
Proceedings of the Neural Information Processing - 19th International Conference, 2012


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