Shaheer U. Saeed

According to our database, Shaheer U. Saeed authored at least 30 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation.

Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

IEEE Trans. Pattern Anal. Mach. Intell., February, 2025

2024

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy.

Iani J. M. B. Gayo, Shaheer U. Saeed, Ester Bonmati, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

Int. J. Comput. Assist. Radiol. Surg., June, 2024

Active learning using adaptable task-based prioritisation.

Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu

Medical Image Anal., 2024

T2-Only Prostate Cancer Prediction by Meta-Learning from Bi-Parametric MR Imaging.

Weixi Yi, Yipei Wang, Natasha Thorley, Alexander Ng, Shonit Punwani, Veeru Kasivisvanathan, Dean C. Barratt, Shaheer Ullah Saeed, Yipeng Hu

CoRR, 2024

SAMReg: SAM-enabled Image Registration with ROI-based Correspondence.

Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean C. Barratt, Yipeng Hu

CoRR, 2024

Competing for pixels: a self-play algorithm for weakly-supervised segmentation.

Shaheer U. Saeed, Shiqi Huang, João Ramalhinho, Iani J. M. B. Gayo, Nina Montaña Brown, Ester Bonmati, Stephen P. Pereira, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

CoRR, 2024

Semi-weakly-supervised neural network training for medical image registration.

Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu

CoRR, 2024

Segmentation by Registration-Enabled SAM Prompt Engineering Using Five Reference Images.

Yaxi Chen, Aleksandra Ivanova, Shaheer U. Saeed, Rikin Hargunani, Jie Huang, Chaozong Liu, Yipeng Hu

Proceedings of the Biomedical Image Registration - 11th International Workshop, 2024

Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity.

Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

One Registration is Worth Two Segmentations.

Shiqi Huang, Tingfa Xu, Ziyi Shen, Shaheer Ullah Saeed, Wen Yan, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images.

Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed

Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration.

Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu

Medical Image Anal., December, 2023

A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models.

Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu

CoRR, 2023

SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery.

Nina Montaña Brown, Shaheer U. Saeed, Ahmed Abdulaal, Thomas Dowrick, Yakup Kilic, Sophie Wilkinson, Jack Gao, Meghavi Mashar, Chloe He, Alkisti Stavropoulou, Emma Thomson, Zachary M. C. Baum, Simone Foti, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images.

Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed

Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion.

Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Imaging with Deep Learning, 2023

Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation.

Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu

Proceedings of the Deep Generative Models - Third MICCAI Workshop, 2023

Non-rigid Medical Image Registration using Physics-informed Neural Networks.

Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu

Proceedings of the Information Processing in Medical Imaging, 2023

2022

Cross-institution Male Pelvic Structures.

Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu

Dataset, September, 2022

Image quality assessment for machine learning tasks using meta-reinforcement learning.

Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu

Medical Image Anal., 2022

Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation.

Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu

CoRR, 2022

Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT.

João Ramalhinho, Bongjin Koo, Nina Montaña Brown, Shaheer U. Saeed, Ester Bonmati, Kurinchi Gurusamy, Stephen P. Pereira, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson

Int. J. Comput. Assist. Radiol. Surg., 2022

Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy.

Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu

Proceedings of the Cancer Prevention Through Early Detection, 2022

2021

Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability.

Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu

Proceedings of the Simplifying Medical Ultrasound - Second International Workshop, 2021

Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels.

Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu

Proceedings of the Simplifying Medical Ultrasound - Second International Workshop, 2021

Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection.

Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu

Proceedings of the Information Processing in Medical Imaging, 2021

2020

DeepReg: a deep learning toolkit for medical image registration.

Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

Dataset, November, 2020

DeepReg: a deep learning toolkit for medical image registration.

Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

J. Open Source Softw., 2020

Introduction to Medical Image Registration with DeepReg, Between Old and New.

Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu

CoRR, 2020

Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes.

Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020