Serghei Mangul
Orcid: 0000-0003-4770-3443
According to our database1,
Serghei Mangul
authored at least 37 papers
between 2011 and 2024.
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Bibliography
2024
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.
CoRR, 2024
Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes.
Proceedings of the Research in Computational Molecular Biology, 2024
2023
Response to 'comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing' by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M.
Briefings Bioinform., September, 2023
Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.
Briefings Bioinform., July, 2023
MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation.
CoRR, 2023
SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences.
CoRR, 2023
2022
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities.
CoRR, 2022
Briefings Bioinform., 2022
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022
2021
Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples.
Briefings Bioinform., 2021
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021
2020
Benchmarking of computational error-correction methods for next-generation sequencing data.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
2019
Telescope: an interactive tool for managing large scale analysis from mobile devices.
CoRR, 2019
2018
ROP: Dumpster Diving in RNA-sequencing to Find the Source of 1 Trillion Reads Across Diverse Adult Human Tissues.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.
J. Comput. Biol., 2017
2016
HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads.
Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
2012
Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
Silico Biol., 2012
BMC Bioinform., 2012
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads.
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
BMC Bioinform., 2011
Algorithms Mol. Biol., 2011
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011