Sébastien Moretti

According to our database, Sébastien Moretti authored at least 23 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.

Jerven T. Bolleman, Vincent Emonet, Adrian M. Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan J. Bridge, Severine Duvaud, Elisabeth Gasteiger, Dmitry Kuznetsov, Sébastien Moretti, Pierre-André Michel, Anne Morgat, Marco Pagni, Nicole Redaschi, Monique Zahn-Zabal, Tarcisio Mendes de Farias, Ana Claudia Sima

CoRR, 2024

Application of the RDF framework to integrate heterogenous experimental data of a large chemo- and biodiverse collection from a collaborative research project.

Frédéric Burdet, Luis-Manuel Quiros-Guerrero, Olivier Kirchhoffer, Jahn Nitschke, Pierre-Marie Allard, Louis-Félix Nothias, Arnaud Gaudry, Sébastien Moretti, Robin Engler, Emerson Ferreira Queiroz, Nabil Hanna, Chunyan Wu, Antonio Grondin, Bruno David, Thierry Soldati, Christian Wolfrum, Erick Carreira, Jean-Luc Wolfender, Marco Pagni, Florence Mehl

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

2021

MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models.

Sébastien Moretti, T. Van Du Tran, Florence Mehl, Mark Ibberson, Marco Pagni

Nucleic Acids Res., 2021

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.

Frederic B. Bastian, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S. Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzales-Porta, Yohan Jarosz, Balazs Laurenczy, Philippe Moret, Emilie Person, Patrick Roelli, Komal Sanjeev, Mathieu Seppey, Marc Robinson-Rechavi

Nucleic Acids Res., 2021

2019

Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.

T. Van Du Tran, Sébastien Moretti, Alix T. Coste, Sara Amorim-Vaz, Dominique Sanglard, Marco Pagni

Bioinform., 2019

2017

Updates in Rhea - an expert curated resource of biochemical reactions.

Anne Morgat, Thierry Lombardot, Kristian B. Axelsen, Lucila Aimo, Anne Niknejad, Nevila Hyka-Nouspikel, Elisabeth Coudert, Monica Pozzato, Marco Pagni, Sébastien Moretti, Steven Rosanoff, Joseph Onwubiko, Lydie Bougueleret, Ioannis Xenarios, Nicole Redaschi, Alan J. Bridge

Nucleic Acids Res., 2017

2016

MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.

Sébastien Moretti, Olivier Martin, T. Van Du Tran, Alan J. Bridge, Anne Morgat, Marco Pagni

Nucleic Acids Res., 2016

Tools and data services registry: a community effort to document bioinformatics resources.

Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak

Nucleic Acids Res., 2016

2014

Selectome update: quality control and computational improvements to a database of positive selection.

Sébastien Moretti, Balazs Laurenczy, Walid H. Gharib, Briséïs Castella, Arnold Kuzniar, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin, Heinz Stockinger, Marc Robinson-Rechavi

Nucleic Acids Res., 2014

Reconciliation of metabolites and biochemical reactions for metabolic networks.

Thomas Bernard, Alan J. Bridge, Anne Morgat, Sébastien Moretti, Ioannis Xenarios, Marco Pagni

Briefings Bioinform., 2014

2013

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.

Mathias Ganter, Thomas Bernard, Sébastien Moretti, Jörg Stelling, Marco Pagni

Bioinform., 2013

2012

ExPASy: SIB bioinformatics resource portal.

Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi, Edouard De Castro, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger, Aurélien Grosdidier, Céline Hernandez, Vassilios Ioannidis, Dmitri Kuznetsov, Robin Liechti, Sébastien Moretti, Khaled Mostaguir, Nicole Redaschi, Grégoire Rossier, Ioannis Xenarios, Heinz Stockinger

Nucleic Acids Res., 2012

gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution.

Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger

Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012

2011

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.

Paolo Di Tommaso, Sébastien Moretti, Ioannis Xenarios, Miquel Orobitg, Alberto Montanyola, Jia-Ming Chang, Jean-François Taly, Cédric Notredame

Nucleic Acids Res., 2011

2010

Phylogenetic Code in the Cloud - Can it Meet the Expectations?

Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi, Heinz Stockinger, Dean Flanders

Proceedings of the Healthgrid Applications and Core Technologies, 2010

2009

Selectome: a database of positive selection.

Estelle Proux-Wéra, Romain A. Studer, Sébastien Moretti, Marc Robinson-Rechavi

Nucleic Acids Res., 2009

2008

R-Coffee: a web server for accurately aligning noncoding RNA sequences.

Sébastien Moretti, Andreas Wilm, Desmond G. Higgins, Ioannis Xenarios, Cédric Notredame

Nucleic Acids Res., 2008

Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species.

Frederic B. Bastian, Gilles Parmentier, Julien Roux, Sébastien Moretti, Vincent Laudet, Marc Robinson-Rechavi

Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008

2007

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.

Sébastien Moretti, Fabrice Armougom, Iain M. Wallace, Desmond G. Higgins, C. Victor Jongeneel, Cédric Notredame

Nucleic Acids Res., 2007

2006

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments.

Sébastien Moretti, Frédéric Reinier, Olivier Poirot, Fabrice Armougom, Stéphane Audic, Vladimir Keduas, Cédric Notredame

Nucleic Acids Res., 2006

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.

Fabrice Armougom, Sébastien Moretti, Olivier Poirot, Stéphane Audic, Pierre Dumas, Basile Schaeli, Vladimir Keduas, Cédric Notredame

Nucleic Acids Res., 2006

APDB: a web server to evaluate the accuracy of sequence alignments using structural information.

Fabrice Armougom, Olivier Poirot, Sébastien Moretti, Desmond G. Higgins, Phillip Bucher, Vladimir Keduas, Cédric Notredame

Bioinform., 2006

The iRMSD: a local measure of sequence alignment accuracy using structural information.

Fabrice Armougom, Sébastien Moretti, Vladimir Keduas, Cédric Notredame

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006