Sebastian Bonhoeffer

According to our database, Sebastian Bonhoeffer authored at least 24 papers between 1995 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

estimateR: an R package to estimate and monitor the effective reproductive number.

Jérémie Scire, Jana S. Huisman, Ana Grosu, Daniel C. Angst, Adrian Lison, Jinzhou Li, Marloes H. Maathuis, Sebastian Bonhoeffer, Tanja Stadler

BMC Bioinform., December, 2023

2022

Epidemiological and evolutionary consequences of different types of CRISPR-Cas systems.

Hélène Chabas, Viktor Müller, Sebastian Bonhoeffer, Roland R. Regoes

PLoS Comput. Biol., 2022

2021

Correction: Practical considerations for measuring the effective reproductive number, Rt.

Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey

PLoS Comput. Biol., 2021

Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches.

Judith A. Bouman, Julien Riou, Sebastian Bonhoeffer, Roland R. Regoes

PLoS Comput. Biol., 2021

2020

Practical considerations for measuring the effective reproductive number, Rt.

Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey

PLoS Comput. Biol., 2020

2019

A time resolved clustering method revealing longterm structures and their short-term internal dynamics.

Jonas I. Liechti, Sebastian Bonhoeffer

CoRR, 2019

2018

Assessing the public health impact of tolerance-based therapies with mathematical models.

Nathanaël Hozé, Sebastian Bonhoeffer, Roland R. Regoes

PLoS Comput. Biol., 2018

2017

Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies.

Burcu Tepekule, Hildegard Uecker, Isabel Derungs, Antoine Frénoy, Sebastian Bonhoeffer

PLoS Comput. Biol., 2017

Short-term activity cycles impede information transmission in ant colonies.

Thomas O. Richardson, Jonas Liechti, Nathalie Stroeymeyt, Sebastian Bonhoeffer, Laurent Keller

PLoS Comput. Biol., 2017

Host population structure impedes reversion to drug sensitivity after discontinuation of treatment.

Jonas Liechti, Gabriel E. Leventhal, Sebastian Bonhoeffer

PLoS Comput. Biol., 2017

Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments.

Peter Ashcroft, Markus G. Manz, Sebastian Bonhoeffer

PLoS Comput. Biol., 2017

2016

The Role of Adherence and Retreatment in <i>De Novo</i> Emergence of MDR-TB.

Dominique Cadosch, Pia Abel zur Wiesch, Roger D. Kouyos, Sebastian Bonhoeffer

PLoS Comput. Biol., 2016

2015

From "What Is?" to "What Isn't?" Computational Biology.

Ruth Nussinov, Sebastian Bonhoeffer, Jason A. Papin, Olaf Sporns

PLoS Comput. Biol., 2015

Spatial Heterogeneity in Drug Concentrations Can Facilitate the Emergence of Resistance to Cancer Therapy.

Feng Fu, Martin A. Nowak, Sebastian Bonhoeffer

PLoS Comput. Biol., 2015

2014

Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models.

Veronika Boskova, Sebastian Bonhoeffer, Tanja Stadler

PLoS Comput. Biol., 2014

2012

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase.

Rafal Mostowy, Roger D. Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Can Kesmir, Sebastian Bonhoeffer

PLoS Comput. Biol., 2012

Inferring Epidemic Contact Structure from Phylogenetic Trees.

Gabriel E. Leventhal, Roger D. Kouyos, Tanja Stadler, Viktor von Wyl, Sabine Yerly, Jürg Böni, Cristina Cellerai, Thomas Klimkait, Huldrych F. Günthard, Sebastian Bonhoeffer

PLoS Comput. Biol., 2012

Evolution of Stress Response in the Face of Unreliable Environmental Signals.

Markus Arnoldini, Rafal Mostowy, Sebastian Bonhoeffer, Martin Ackermann

PLoS Comput. Biol., 2012

2011

Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards.

Roger D. Kouyos, Pia Abel zur Wiesch, Sebastian Bonhoeffer

PLoS Comput. Biol., 2011

2010

Evolution of Recombination on an HIV-1 Derived Fitness Landscape.

João Martins, Roger D. Kouyos, Trevor Hinkley, Colombe Chappey, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Sebastian Bonhoeffer

Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, 2010

2009

Predicting the Evolution of Sex on Complex Fitness Landscapes.

Dusan Misevic, Roger D. Kouyos, Sebastian Bonhoeffer

PLoS Comput. Biol., 2009

Red Queen Dynamics with Non-Standard Fitness Interactions.

Jan Engelstädter, Sebastian Bonhoeffer

PLoS Comput. Biol., 2009

2006

High Epitope Expression Levels Increase Competition between T Cells.

Almut Scherer, Marcel Salathé, Sebastian Bonhoeffer

PLoS Comput. Biol., 2006

1995

Spatial Games and Evolution of Cooperation.

Robert M. May, Sebastian Bonhoeffer, Martin A. Nowak

Proceedings of the Advances in Artificial Life, 1995