Seán I. O'Donoghue

According to our database, Seán I. O'Donoghue authored at least 28 papers between 1991 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Assessing 2D visual encoding of 3D spatial connectivity.

Benedetta Frida Baldi, Jenny Vuong, Seán I. O'Donoghue

Frontiers Bioinform., May, 2023

2022

Collaborative Sense-Making in Genomic Research: The Role of Visualisation.

Markus Rittenbruch, Kellie Vella, Margot Brereton, James M. Hogan, Daniel Johnson, Julian Heinrich, Seán I. O'Donoghue

IEEE Trans. Vis. Comput. Graph., 2022

A roadmap for the functional annotation of protein families: a community perspective.

Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J. Bridge, Stephen K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria Jesus Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman, Françoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter Weigele, Valerie Wood, Elisha M. Wood-Charlson, Jin Xu

Database J. Biol. Databases Curation, 2022

2021

PredictProtein - Predicting Protein Structure and Function for 29 Years.

Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost

Nucleic Acids Res., 2021

Grand Challenges in Bioinformatics Data Visualization.

Seán I. O'Donoghue

Frontiers Bioinform., 2021

2018

Versus - A tool for evaluating visualizations and image quality using a 2AFC methodology.

Jenny Vuong, Sandeep Kaur, Julian Heinrich, Bosco K. Ho, Christopher J. Hammang, Benedetta Frida Baldi, Seán I. O'Donoghue

Vis. Informatics, 2018

Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).

Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden

NII Shonan Meet. Rep., 2018

2017

Comparative eye-tracking evaluation of scatterplots and parallel coordinates.

Rudolf Netzel, Jenny Vuong, Ulrich Engelke, Seán I. O'Donoghue, Daniel Weiskopf, Julian Heinrich

Vis. Informatics, 2017

The Dark Proteome Database.

Nelson Perdigao, Agostinho C. Rosa, Seán I. O'Donoghue

BioData Min., 2017

2016

Web-based Molecular Graphics (NII Shonan Meeting 2016-12).

Andrea Schafferhans, Seán I. O'Donoghue, Haruki Nakamura

NII Shonan Meet. Rep., 2016

Evaluating Viewpoint Entropy for Ribbon Representation of Protein Structure.

Julian Heinrich, Jenny Vuong, Christopher J. Hammang, A. Wu, Markus Rittenbruch, James M. Hogan, Margot Brereton, Seán I. O'Donoghue

Comput. Graph. Forum, 2016

Using videogames to improve molecular graphics tools.

Zachary Fitz-Walter, Seán I. O'Donoghue, Benedetta Frida Baldi, James M. Hogan, Daniel M. Johnson, Margot Brereton

Proceedings of the 28th Australian Conference on Computer-Human Interaction, 2016

Can Videogame Players Inform Better Scientific Visualization'.

Holly Hutson, Daniel M. Johnson, Xin-Yi Chua, James M. Hogan, Margot Brereton, Markus Rittenbruch, Benedetta Frida Baldi, Seán I. O'Donoghue

Proceedings of the 2016 Annual Symposium on Computer-Human Interaction in Play, 2016

Developing a Visual Analytics Tool for Large-Scale Proteomics Time-Series Data.

Jenny Vuong, Christian Stolte, Sandeep Kaur, Seán I. O'Donoghue

Proceedings of the 2016 Big Data Visual Analytics, 2016

2015

Integrated visual analysis of protein structures, sequences, and feature data.

Christian Stolte, Kenneth Sabir, Julian Heinrich, Christopher J. Hammang, Andrea Schafferhans, Seán I. O'Donoghue

BMC Bioinform., December, 2015

Visual Analytics of Gene Sets Comparison.

Nelson Perdigao, Theodoros G. Soldatos, Kenneth Sabir, Seán I. O'Donoghue

Proceedings of the Big Data Visual Analytics, 2015

Evaluating the Effectiveness of Color to Convey Alignment Quality in Macromolecular Structures.

Julian Heinrich, Sandeep Kaur, Seán I. O'Donoghue

Proceedings of the Big Data Visual Analytics, 2015

2014

COMPARTMENTS: unification and visualization of protein subcellular localization evidence.

Janos X. Binder, Sune Pletscher-Frankild, Kalliopi Tsafou, Christian Stolte, Seán I. O'Donoghue, Reinhard Schneider, Lars Juhl Jensen

Database J. Biol. Databases Curation, 2014

On the use of 1D, 2D, and 3D visualisation for molecular graphics.

Julian Heinrich, Michael Burch, Seán I. O'Donoghue

Proceedings of the 2014 IEEE VIS International Workshop on 3DVis, 2014

2013

The Molecular Control Toolkit: Controlling 3D molecular graphics via gesture and voice.

Kenneth Sabir, Christian Stolte, Bruce Tabor, Seán I. O'Donoghue

Proceedings of the IEEE Symposium on Biological Data Visualization, 2013

2012

Biological Data Visualization (Dagstuhl Seminar 12372).

Carsten Görg, Lawrence Hunter, Jessie Kennedy, Seán I. O'Donoghue, Jarke J. van Wijk

Dagstuhl Reports, 2012

Caipirini: using gene sets to rank literature.

Theodoros G. Soldatos, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider

BioData Min., 2012

2010

Reflect: A practical approach to web semantics.

Seán I. O'Donoghue, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam, Reinhard Schneider, Lars Juhl Jensen

J. Web Semant., 2010

2008

Arena3D: visualization of biological networks in 3D.

Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider

BMC Syst. Biol., 2008

2004

The SRS 3D module: integrating structures, sequences and features.

Seán I. O'Donoghue, Joachim E. W. Meyer, Andrea Schafferhans, Karsten Fries

Bioinform., 2004

2003

The PSSH database of alignments between protein sequences and tertiary structures.

Andrea Schafferhans, Joachim E. W. Meyer, Seán I. O'Donoghue

Nucleic Acids Res., 2003

1997

Sisyphus and prediction of protein structure.

Burkhard Rost, Seán I. O'Donoghue

Comput. Appl. Biosci., 1997

1991

Structural interpretation of fluorescence resonance-energy transfer measurements.

Seán I. O'Donoghue

Comput. Appl. Biosci., 1991