Satya Sanket Sahoo

According to our database, Satya Sanket Sahoo authored at least 62 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Towards building a trustworthy pipeline integrating Neuroscience Gateway and Open Science Chain.

Subhashini Sivagnanam, Steven Yeu, Kai Lin, S. Sakai, F. Garzon, Kenneth Yoshimoto, Katrina Prantzalos, Dipak P. Upadhyaya, Amitava Majumdar, Satya S. Sahoo, William W. Lytton

Database J. Biol. Databases Curation, January, 2024

Large language models for biomedicine: foundations, opportunities, challenges, and best practices.

Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang

J. Am. Medical Informatics Assoc., 2024

Machine learning interpretability methods to characterize the importance of hematologic biomarkers in prognosticating patients with suspected infection.

Dipak P. Upadhyaya, Yasir Tarabichi, Katrina Prantzalos, Salman Ayub, David C. Kaelber, Satya S. Sahoo

Comput. Biol. Medicine, 2024

A 360° View for Large Language Models: Early Detection of Amblyopia in Children Using Multi-view Eye Movement Recordings.

Dipak P. Upadhyaya, Aasef G. Shaikh, Gokce Busra Cakir, Katrina Prantzalos, Pedram Golnari, Fatema F. Ghasia, Satya S. Sahoo

Proceedings of the Artificial Intelligence in Medicine - 22nd International Conference, 2024

2023

NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data.

Lei Wang, José Luis Ambite, Abhishek M. Appaji, Janine Bijsterbosch, Jérôme Dockès, Rick Herrick, Alexander Kogan, Howard Lander, Daniel S. Marcus, Stephen Moore, Jean-Baptiste Poline, Arcot Rajasekar, Satya S. Sahoo, Matthew D. Turner, Xiaochen Wang, Yue Wang, Jessica A. Turner

Frontiers Neuroinformatics, March, 2023

NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use.

Satya S. Sahoo, Matthew D. Turner, Lei Wang, José Luis Ambite, Abhishek M. Appaji, Arcot Rajasekar, Howard Lander, Yue Wang, Jessica A. Turner

Frontiers Neuroinformatics, March, 2023

2022

Enabling Scientific Reproducibility through FAIR Data Management: An ontology-driven deep learning approach in the NeuroBridge Project.

Xiaochen Wang, Yue Wang, José Luis Ambite, Abhishek M. Appaji, Howard Lander, Stephen Moore, Arcot Rajasekar, Jessica A. D. Turner, Matthew D. Turner, Lei Wang, Satya S. Sahoo

Proceedings of the AMIA 2022, 2022

2021

Characterizing Brain Network Dynamics using Persistent Homology in Patients with Refractory Epilepsy.

Jianzhe Zhang, Roland Bauman, Nassim Shafiabadi, Nick Gurski, Guadalupe Fernandez-BacaVaca, Satya S. Sahoo

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Epilepsy-Connect: An Integrated Knowledgebase for Characterizing Alterations in Consciousness State of Pharmacoresistant Epilepsy Patients.

Katrina Prantzalos, Jianzhe Zhang, Nassim Shafiabadi, Guadalupe Fernandez-BacaVaca, Satya S. Sahoo

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Parkinson and movement disorders ontology for clinically-oriented and clinicians-driven data mining of multi-center cohorts in Parkinson's disease.

Deepak K. Gupta, Massimo Marano, Raj Aurora, James Boyd, Satya S. Sahoo

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

NeuroIntegrative Connectivity (NIC) Informatics Tool for Brain Functional Connectivity Network Analysis in Cohort Studies.

Satya S. Sahoo, Arthur L. Gershon, Nassim Shafiabadi, Kaushik Ghosh, Curtis Tatsuoka, Samden D. Lhatoo, Guadalupe Fernandez-BacaVaca

Proceedings of the AMIA 2020, 2020

2019

ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata.

Satya S. Sahoo, Joshua Valdez, Matthew Kim, Michael Rueschman, Susan Redline

Int. J. Medical Informatics, 2019

Computation of Brain Functional Connectivity Network Measures in Epilepsy: A Web-Based Platform for EEG Signal Data Processing and Analysis.

Vimig Socrates, Arthur L. Gershon, Satya S. Sahoo

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Semantic Provenance Graph for Reproducibility of Biomedical Research Studies: Generating and Analyzing Graph Structures from Published Literature.

Satya S. Sahoo, Joshua Valdez, Michael Rueschman, Matthew Kim

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Enhancing Multi-Center Patient Cohort Studies in the Managing Epilepsy Well (MEW) Network: Integrated Data Integration and Statistical Analysis.

Xinting Hong, Chang Liu, Hasina Momotaz, Kristin Cassidy, Martha Sajatovic, Satya S. Sahoo

Proceedings of the AMIA 2019, 2019

2018

Classification of Provenance Triples for Scientific Reproducibility: A Comparative Evaluation of Deep Learning Models in the ProvCaRe Project.

Joshua Valdez, Matthew Kim, Michael Rueschman, Susan Redline, Satya S. Sahoo

Proceedings of the Provenance and Annotation of Data and Processes, 2018

2017

An Extensible Ontology Modeling Approach Using Post Coordinated Expressions for Semantic Provenance in Biomedical Research.

Joshua Valdez, Michael Rueschman, Matthew Kim, Sara ArabYarmohammadi, Susan Redline, Satya S. Sahoo

Proceedings of the On the Move to Meaningful Internet Systems. OTM 2017 Conferences, 2017

ProvCaRe Semantic Provenance Knowledgebase: Evaluating Scientific Reproducibility of Research Studies.

Joshua Valdez, Matthew Kim, Michael Rueschman, Vimig Socrates, Satya S. Sahoo

Proceedings of the AMIA 2017, 2017

A Flexible Computational Neuroinformatics Workflow for Computing Functional Networks in Epilepsy Neurological Disorder.

Arthur L. Gershon, Bilal Zonjy, Curtis Tatsuoka, Kaushik Ghosh, Satya S. Sahoo

Proceedings of the AMIA 2017, 2017

2016

Processing Neurology Clinical Data for Knowledge Discovery: Scalable Data Flows Using Distributed Computing.

Satya S. Sahoo, Annan Wei, Curtis Tatsuoka, Kaushik Ghosh, Samden D. Lhatoo

Proceedings of the Machine Learning for Health Informatics, 2016

Insight: An ontology-based integrated database and analysis platform for epilepsy self-management research.

Satya S. Sahoo, Priya Ramesh, Elisabeth Welter, Ashley Bukach, Joshua Valdez, Curtis Tatsuoka, Yvan Bamps, Shelley Stoll, Barbara C. Jobst, Martha Sajatovic

Int. J. Medical Informatics, 2016

Managing information well: Toward an ontology-driven informatics platform for data sharing and secondary use in epilepsy self-management research centers.

Satya S. Sahoo, Guo-Qiang Zhang, Yvan Bamps, Robert Fraser, Shelley Stoll, Samden D. Lhatoo, Curtis Tatsuoka, Johnny Sams, Elisabeth Welter, Martha Sajatovic

Health Informatics J., 2016

NeuroPigPen: A Scalable Toolkit for Processing Electrophysiological Signal Data in Neuroscience Applications Using Apache Pig.

Satya S. Sahoo, Annan Wei, Joshua Valdez, Li Wang, Bilal Zonjy, Curtis Tatsuoka, Kenneth A. Loparo, Samden D. Lhatoo

Frontiers Neuroinformatics, 2016

An Ontology-Enabled Natural Language Processing Pipeline for Provenance Metadata Extraction from Biomedical Text (Short Paper).

Joshua Valdez, Michael Rueschman, Matthew Kim, Susan Redline, Satya S. Sahoo

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2016 Conferences, 2016

Comparative Evaluation for Brain Structural Connectivity Approaches: Towards Integrative Neuroinformatics Tool for Epilepsy Clinical Research.

Sheng Yang, Curtis Tatsuoka, Kaushik Ghosh, Nuria Lacuey Lecumberri, Samden D. Lhatoo, Satya Sanket Sahoo

Proceedings of the Summit on Clinical Research Informatics, 2016

Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description.

Satya S. Sahoo, Joshua Valdez, Michael Rueschman

Proceedings of the AMIA 2016, 2016

2015

A scalable neuroinformatics data flow for electrophysiological signals using MapReduce.

Catherine P. Jayapandian, Annan Wei, Priya Ramesh, Bilal Zonjy, Samden D. Lhatoo, Kenneth A. Loparo, Guo-Qiang Zhang, Satya S. Sahoo

Frontiers Neuroinformatics, 2015

Insight: Semantic provenance and analysis platform for multi-center neurology healthcare research.

Priya Ramesh, Annan Wei, Elisabeth Welter, Yvan Bamps, Shelley Stoll, Ashley Bukach, Martha Sajatovic, Satya S. Sahoo

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Complex epilepsy phenotype extraction from narrative clinical discharge summaries.

Licong Cui, Satya Sanket Sahoo, Samden D. Lhatoo, Gaurav Garg, Prashant Rai, Alireza Bozorgi, Guo-Qiang Zhang

J. Biomed. Informatics, 2014

Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care.

Satya Sanket Sahoo, Samden D. Lhatoo, Deepak K. Gupta, Licong Cui, Meng Zhao, Catherine P. Jayapandian, Alireza Bozorgi, Guo-Qiang Zhang

J. Am. Medical Informatics Assoc., 2014

Heart beats in the cloud: distributed analysis of electrophysiological '<i>Big Data</i>' using cloud computing for epilepsy clinical research.

Satya Sanket Sahoo, Catherine P. Jayapandian, Gaurav Garg, Farhad Kaffashi, Stephanie Chung, Alireza Bozorgi, Chien-Hung Chen, Kenneth A. Loparo, Samden D. Lhatoo, Guo-Qiang Zhang

J. Am. Medical Informatics Assoc., 2014

Biomedical Big Data for Clinical Research and Patient Care: Role of Semantic Computing.

Satya Sanket Sahoo

Proceedings of the 2014 IEEE International Conference on Semantic Computing, 2014

Domain Ontology As Conceptual Model for Big Data Management: Application in Biomedical Informatics.

Catherine P. Jayapandian, Chien-Hung Chen, Aman Dabir, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo

Proceedings of the Conceptual Modeling - 33rd International Conference, 2014

MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System.

Guo-Qiang Zhang, Licong Cui, Samden D. Lhatoo, Satya S. Sahoo

Proceedings of the AMIA 2014, 2014

2013

Electrophysiological Signal Analysis and Visualization using Cloudwave for Epilepsy Clinical Research.

Catherine P. Jayapandian, Chien-Hung Chen, Alireza Bozorgi, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo

Proceedings of the MEDINFO 2013, 2013

Querying Complex Federated Clinical Data Using Ontological Mapping and Subsumption Reasoning.

Licong Cui, Remo Mueller, Satya Sanket Sahoo, Guo-Qiang Zhang

Proceedings of the IEEE International Conference on Healthcare Informatics, 2013

From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data.

Amir H. Asiaee, Prashant Doshi, Todd Minning, Satya Sanket Sahoo, Priti Parikh, Amit P. Sheth, Rick L. Tarleton

Proceedings of the Data Integration in the Life Sciences - 9th International Conference, 2013

Cloudwave: Distributed Processing of "Big Data" from Electrophysiological Recordings for Epilepsy Clinical Research Using Hadoop.

Catherine P. Jayapandian, Chien-Hung Chen, Alireza Bozorgi, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo

Proceedings of the AMIA 2013, 2013

2012

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Catherine P. Jayapandian, Meng Zhao, Rob M. Ewing, Guo-Qiang Zhang, Satya Sanket Sahoo

BMC Syst. Biol., 2012

The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.

Priti Parikh, Jie Zheng, Flora J. Logan-Klumpler, Christian J. Stoeckert Jr., Christos Louis, Pantelis Topalis, Anna V. Protasio, Amit P. Sheth, Mark Carrington, Matthew Berriman, Satya Sanket Sahoo

J. Biomed. Semant., 2012

Role of semantic web in health informatics.

Satya Sanket Sahoo, Amit P. Sheth, Guo-Qiang Zhang

Proceedings of the ACM International Health Informatics Symposium, 2012

An Analysis of Multi-type Relational Interactions in FMA Using Graph Motifs with Disjointness Constraints.

Guo-Qiang Zhang, Lingyun Luo, Chimezie Thomas-Ogbuji, Cliff A. Joslyn, José Leonardo Villaraza Mejino Jr., Satya Sanket Sahoo

Proceedings of the AMIA 2012, 2012

A Distributed Semantic Web Approach for Cohort Identification.

Joseph Teagno, Richard C. Kiefer, Jyotishman Pathak, G. Q. Zhang, Satya Sanket Sahoo

Proceedings of the AMIA 2012, 2012

OPIC: Ontology-driven Patient Information Capturing System for Epilepsy.

Satya Sanket Sahoo, Meng Zhao, Lingyun Luo, Alireza Bozorgi, Deepak K. Gupta, Samden D. Lhatoo, Guo-Qiang Zhang

Proceedings of the AMIA 2012, 2012

EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification.

Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo, Alireza Bozorgi

Proceedings of the AMIA 2012, 2012

2011

Extending Semantic Provenance into the Web of Data.

Jun Zhao, Satya Sanket Sahoo, Paolo Missier, Amit P. Sheth, Carole A. Goble

IEEE Internet Comput., 2011

A unified framework for managing provenance information in translational research.

Satya Sanket Sahoo, Vinh Nguyen, Olivier Bodenreider, Priti Parikh, Todd Minning, Amit P. Sheth

BMC Bioinform., 2011

Towards Desiderata for Provenance Ontologies in Biomedicine.

Satya Sanket Sahoo

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Provenance for Scientific Workflows Towards Reproducible Research.

Roger S. Barga, Yogesh L. Simmhan, Eran Chinthaka, Satya Sanket Sahoo, Jared Jackson, Nelson Araujo

IEEE Data Eng. Bull., 2010

Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data.

Satya Sanket Sahoo, Olivier Bodenreider, Pascal Hitzler, Amit P. Sheth, Krishnaprasad Thirunarayan

Proceedings of the Scientific and Statistical Database Management, 2010

Provenance of Microarray Experiments for a Better Understanding of Experiment Results.

Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung

Proceedings of the Second International Workshop on the role of Semantic Web in Provenance Management, 2010

<i>Janus</i>: From Workflows to Semantic Provenance and Linked Open Data.

Paolo Missier, Satya Sanket Sahoo, Jun Zhao, Carole A. Goble, Amit P. Sheth

Proceedings of the Provenance and Annotation of Data and Processes, 2010

2009

Introduction.

Juliana Freire, Paolo Missier, Satya Sanket Sahoo

Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), 2009

Ontology-Driven Provenance Management in eScience: An Application in Parasite Research.

Satya Sanket Sahoo, D. Brent Weatherly, Raghava Mutharaju, Pramod Anantharam, Amit P. Sheth, Rick L. Tarleton

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2009, 2009

2008

An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence.

Satya Sanket Sahoo, Olivier Bodenreider, Joni L. Rutter, Karen J. Skinner, Amit P. Sheth

J. Biomed. Informatics, 2008

Semantic Sensor Web.

Amit P. Sheth, Cory A. Henson, Satya Sanket Sahoo

IEEE Internet Comput., 2008

Semantic Provenance for eScience: Managing the Deluge of Scientific Data.

Satya Sanket Sahoo, Amit P. Sheth, Cory A. Henson

IEEE Internet Comput., 2008

Capturing Workflow Event Data for Monitoring, Performance Analysis, and Management of Scientific Workflows.

Matthew D. Valerio, Satya Sanket Sahoo, Roger S. Barga, Jared Jackson

Proceedings of the Fourth International Conference on e-Science, 2008

2007

From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology.

Satya Sanket Sahoo, Kelly Zeng, Olivier Bodenreider, Amit P. Sheth

Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

2006

Knowledge modeling and its application in life sciences: a tale of two ontologies.

Satya Sanket Sahoo, Christopher Thomas, Amit P. Sheth, William S. York, Samir Tartir

Proceedings of the 15th international conference on World Wide Web, 2006

Bioinformatics Applications Of Web Services, Web Processes And Role Of Semantics.

Satya Sanket Sahoo, Amit P. Sheth

Proceedings of the Semantic Web Services, Processes and Applications, 2006

2005

Template Based Semantic Similarity for Security Applications.

Boanerges Aleman-Meza, Christian Halaschek-Wiener, Satya Sanket Sahoo, Amit P. Sheth, Ismailcem Budak Arpinar

Proceedings of the Intelligence and Security Informatics, 2005