Sangmin Seo

According to our database, Sangmin Seo authored at least 45 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

De novo drug design through gradient-based regularized search in information-theoretically controlled latent space.

Hyosoon Jang, Sangmin Seo, Sanghyun Park, Byung Ju Kim, Geon-Woo Choi, Jonghwan Choi, Chihyun Park

J. Comput. Aided Mol. Des., December, 2024

K2vTune: A workload-aware configuration tuning for RocksDB.

Jieun Lee, Sangmin Seo, Jonghwan Choi, Sanghyun Park

Inf. Process. Manag., January, 2024

Pseq2Sites: Enhancing protein sequence-based ligand binding-site prediction accuracy via the deep convolutional network and attention mechanism.

Sangmin Seo, Jonghwan Choi, Seungyeon Choi, Jieun Lee, Chihyun Park, Sanghyun Park

Eng. Appl. Artif. Intell., January, 2024

PIDiff: Physics informed diffusion model for protein pocket-specific 3D molecular generation.

Seungyeon Choi, Sangmin Seo, Byung Ju Kim, Chihyun Park, Sanghyun Park

Comput. Biol. Medicine, 2024

DrDiff: Drug Response Prediction Through Controllable Diffusion-GE and Graph Attention Network.

Seungyeon Choi, Sangmin Seo, Jonghwan Choi, Chihyun Park, Sanghyun Park

Proceedings of the ECAI 2024 - 27th European Conference on Artificial Intelligence, 19-24 October 2024, Santiago de Compostela, Spain, 2024

SPIN: SE(3)-Invariant Physics Informed Network for Binding Affinity Prediction.

Seungyeon Choi, Sangmin Seo, Sanghyun Park

Proceedings of the ECAI 2024 - 27th European Conference on Artificial Intelligence, 19-24 October 2024, Santiago de Compostela, Spain, 2024

2023

COMA: efficient structure-constrained molecular generation using contractive and margin losses.

Jonghwan Choi, Sangmin Seo, Sanghyun Park

J. Cheminformatics, December, 2023

SELF-EdiT: Structure-constrained molecular optimisation using SELFIES editing transformer.

Shengmin Piao, Jonghwan Choi, Sangmin Seo, Sanghyun Park

Appl. Intell., November, 2023

DARK: Deep automatic Redis knobs tuning system depending on the persistence method.

Ju Yeon Seo, Kyeonghun Kim, Sangmin Seo, Sanghyun Park

Expert Syst. Appl., July, 2023

ReBADD-SE: Multi-objective molecular optimisation using SELFIES fragment and off-policy self-critical sequence training.

Jonghwan Choi, Sangmin Seo, Seungyeon Choi, Shengmin Piao, Chihyun Park, Sung Jin Ryu, Byung Ju Kim, Sanghyun Park

Comput. Biol. Medicine, May, 2023

2021

Binding affinity prediction for protein-ligand complex using deep attention mechanism based on intermolecular interactions.

Sangmin Seo, Jonghwan Choi, Sanghyun Park, Jaegyoon Ahn

BMC Bioinform., 2021

MolBit: De novo Drug Design via Binary Representations of SMILES for avoiding the Posterior Collapse Problem.

Jonghwan Choi, Sangmin Seo, Jinuk Park, Sanghyun Park

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Analysis of Threading Libraries for High Performance Computing.

Adrián Castelló, Rafael Mayo Gual, Sangmin Seo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña

IEEE Trans. Computers, 2020

2019

Extreme-Scale Stochastic Particle Tracing for Uncertain Unsteady Flow Visualization and Analysis.

Hanqi Guo, Wenbin He, Sangmin Seo, Han-Wei Shen, Emil M. Constantinescu, Chunhui Liu, Tom Peterka

IEEE Trans. Vis. Comput. Graph., 2019

BOLT: Optimizing OpenMP Parallel Regions with User-Level Threads.

Shintaro Iwasaki, Abdelhalim Amer, Kenjiro Taura, Sangmin Seo, Pavan Balaji

Proceedings of the 28th International Conference on Parallel Architectures and Compilation Techniques, 2019

2018

Argobots: A Lightweight Low-Level Threading and Tasking Framework.

Sangmin Seo, Abdelhalim Amer, Pavan Balaji, Cyril Bordage, George Bosilca, Alex Brooks, Philip H. Carns, Adrián Castelló, Damien Genet, Thomas Hérault, Shintaro Iwasaki, Prateek Jindal, Laxmikant V. Kalé, Sriram Krishnamoorthy, Jonathan Lifflander, Huiwei Lu, Esteban Meneses, Marc Snir, Yanhua Sun, Kenjiro Taura, Peter H. Beckman

IEEE Trans. Parallel Distributed Syst., 2018

Prediction of GPCR-Ligand Binding Using Machine Learning Algorithms.

Sangmin Seo, Jonghwan Choi, Soon Kil Ahn, Kil Won Kim, Jaekwang Kim, Jaehyuck Choi, Jinho Kim, Jaegyoon Ahn

Comput. Math. Methods Medicine, 2018

2017

Why is MPI so slow?: analyzing the fundamental limits in implementing MPI-3.1.

Ken Raffenetti, Abdelhalim Amer, Lena Oden, Charles Archer, Wesley Bland, Hajime Fujita, Yanfei Guo, Tomislav Janjusic, Dmitry Durnov, Michael Blocksome, Min Si, Sangmin Seo, Akhil Langer, Gengbin Zheng, Masamichi Takagi, Paul K. Coffman, Jithin Jose, Sayantan Sur, Alexander Sannikov, Sergey Oblomov, Michael Chuvelev, Masayuki Hatanaka, Xin Zhao, Paul F. Fischer, Thilina Rathnayake, Matthew Otten, Misun Min, Pavan Balaji

Proceedings of the International Conference for High Performance Computing, 2017

GLTO: On the Adequacy of Lightweight Thread Approaches for OpenMP Implementations.

Adrián Castelló, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña

Proceedings of the 46th International Conference on Parallel Processing, 2017

GLT: A Unified API for Lightweight Thread Libraries.

Adrián Castelló, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña

Proceedings of the Euro-Par 2017: Parallel Processing - 23rd International Conference on Parallel and Distributed Computing, Santiago de Compostela, Spain, August 28, 2017

Advanced Thread Synchronization for Multithreaded MPI Implementations.

Hoang-Vu Dang, Sangmin Seo, Abdelhalim Amer, Pavan Balaji

Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

2016

Enabling NVM for Data-Intensive Scientific Services.

Philip H. Carns, John Jenkins, Charles D. Cranor, Scott Atchley, Sangmin Seo, Shane Snyder, Robert B. Ross

Proceedings of the 4th Workshop on Interactions of NVM/Flash with Operating Systems and Workloads, 2016

Systemwide Power Management with Argo.

Daniel A. Ellsworth, Tapasya Patki, Swann Perarnau, Sangmin Seo, Abdelhalim Amer, Judicael A. Zounmevo, Rinku Gupta, Kazutomo Yoshii, Henry Hoffmann, Allen D. Malony, Martin Schulz, Peter H. Beckman

Proceedings of the 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, 2016

SWAP-Assembler 2: Optimization of De Novo Genome Assembler at Extreme Scale.

Jintao Meng, Sangmin Seo, Pavan Balaji, Yanjie Wei, Bingqiang Wang, Shengzhong Feng

Proceedings of the 45th International Conference on Parallel Processing, 2016

A Review of Lightweight Thread Approaches for High Performance Computing.

Adrián Castelló, Antonio J. Peña, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí

Proceedings of the 2016 IEEE International Conference on Cluster Computing, 2016

2015

A Performance Model for GPUs with Caches.

Thanh Tuan Dao, Jungwon Kim, Sangmin Seo, Bernhard Egger, Jaejin Lee

IEEE Trans. Parallel Distributed Syst., 2015

MPI+ULT: Overlapping Communication and Computation with User-Level Threads.

Huiwei Lu, Sangmin Seo, Pavan Balaji

Proceedings of the 17th IEEE International Conference on High Performance Computing and Communications, 2015

Implementation and Evaluation of MPI Nonblocking Collective I/O.

Sangmin Seo, Robert Latham, Junchao Zhang, Pavan Balaji

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

SWAP-Assembler 2: Scalable Genome Assembler towards Millions of Cores - Practice and Experience.

Jintao Meng, Yanjie Wei, Sangmin Seo, Pavan Balaji

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

Lessons Learned Implementing User-Level Failure Mitigation in MPICH.

Wesley Bland, Huiwei Lu, Sangmin Seo, Pavan Balaji

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2013

A study of secure data transmissions in mobile cloud computing from the energy consumption side.

Jin-A. Hong, Sangmin Seo, Namgi Kim, Byoung-Dai Lee

Proceedings of the International Conference on Information Networking 2013, 2013

Automatic OpenCL work-group size selection for multicore CPUs.

Sangmin Seo, Jun Lee, Gangwon Jo, Jaejin Lee

Proceedings of the 22nd International Conference on Parallel Architectures and Compilation Techniques, 2013

2012

OpenCL as a unified programming model for heterogeneous CPU/GPU clusters.

Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee

Proceedings of the 17th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2012

SnuCL: an OpenCL framework for heterogeneous CPU/GPU clusters.

Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee

Proceedings of the International Conference on Supercomputing, 2012

An automatic code overlaying technique for multicores with explicitly-managed memory hierarchies.

Choonki Jang, Jun Lee, Sangmin Seo, Jaejin Lee

Proceedings of the 10th Annual IEEE/ACM International Symposium on Code Generation and Optimization, 2012

2011

OpenCL as a Programming Model for GPU Clusters.

Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee

Proceedings of the Languages and Compilers for Parallel Computing, 2011

Performance characterization of the NAS Parallel Benchmarks in OpenCL.

Sangmin Seo, Gangwon Jo, Jaejin Lee

Proceedings of the 2011 IEEE International Symposium on Workload Characterization, 2011

An efficient software shared virtual memory for the single-chip cloud computer.

Junghyun Kim, Sangmin Seo, Jaejin Lee

Proceedings of the APSys '11 Asia Pacific Workshop on Systems, 2011

SFMalloc: A Lock-Free and Mostly Synchronization-Free Dynamic Memory Allocator for Manycores.

Sangmin Seo, Junghyun Kim, Jaejin Lee

Proceedings of the 2011 International Conference on Parallel Architectures and Compilation Techniques, 2011

An OpenCL Framework for Homogeneous Manycores with No Hardware Cache Coherence.

Jun Lee, Jungwon Kim, Junghyun Kim, Sangmin Seo, Jaejin Lee

Proceedings of the 2011 International Conference on Parallel Architectures and Compilation Techniques, 2011

2010

COMIC++: A software SVM system for heterogeneous multicore accelerator clusters.

Jaejin Lee, Jun Lee, Sangmin Seo, Jungwon Kim, Seungkyun Kim, Zehra Sura

Proceedings of the 16th International Conference on High-Performance Computer Architecture (HPCA-16 2010), 2010

A software-SVM-based transactional memory for multicore accelerator architectures with local memory.

Jun Lee, Sangmin Seo, Jaejin Lee

Proceedings of the 19th International Conference on Parallel Architectures and Compilation Techniques, 2010

An OpenCL framework for heterogeneous multicores with local memory.

Jaejin Lee, Jungwon Kim, Sangmin Seo, Seungkyun Kim, Jung-Ho Park, Honggyu Kim, Thanh Tuan Dao, Yongjin Cho, Sung Jong Seo, Seung Hak Lee, Seung Mo Cho, Hyo Jung Song, Sang-Bum Suh, Jong-Deok Choi

Proceedings of the 19th International Conference on Parallel Architectures and Compilation Techniques, 2010

2009

Design and implementation of software-managed caches for multicores with local memory.

Sangmin Seo, Jaejin Lee, Zehra Sura

Proceedings of the 15th International Conference on High-Performance Computer Architecture (HPCA-15 2009), 2009

2008

COMIC: a coherent shared memory interface for cell be.

Jaejin Lee, Sangmin Seo, Chihun Kim, Junghyun Kim, Posung Chun, Zehra Sura, Jungwon Kim, Sangyong Han

Proceedings of the 17th International Conference on Parallel Architectures and Compilation Techniques, 2008