Sanghyun Park

Orcid: 0000-0002-5196-6193

Affiliations:
  • Yonsei University, Department of Computer Science, South Korea
  • Hanyang University, Seoul, South Korea
  • Pohang University of Science and Technology, POSTECH, Department of Computer Science and Engineering, South Korea


According to our database1, Sanghyun Park authored at least 131 papers between 2000 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
De novo drug design through gradient-based regularized search in information-theoretically controlled latent space.
J. Comput. Aided Mol. Des., December, 2024

K2vTune: A workload-aware configuration tuning for RocksDB.
Inf. Process. Manag., January, 2024

Pseq2Sites: Enhancing protein sequence-based ligand binding-site prediction accuracy via the deep convolutional network and attention mechanism.
Eng. Appl. Artif. Intell., January, 2024

VideoPatchCore: An Effective Method to Memorize Normality for Video Anomaly Detection.
CoRR, 2024

PIDiff: Physics informed diffusion model for protein pocket-specific 3D molecular generation.
Comput. Biol. Medicine, 2024

Time-Series to Image-Transformed Adversarial Autoencoder for Anomaly Detection.
IEEE Access, 2024

Making Anomalies More Anomalous: Video Anomaly Detection Using a Novel Generator and Destroyer.
IEEE Access, 2024

DrDiff: Drug Response Prediction Through Controllable Diffusion-GE and Graph Attention Network.
Proceedings of the ECAI 2024 - 27th European Conference on Artificial Intelligence, 19-24 October 2024, Santiago de Compostela, Spain, 2024

SPIN: SE(3)-Invariant Physics Informed Network for Binding Affinity Prediction.
Proceedings of the ECAI 2024 - 27th European Conference on Artificial Intelligence, 19-24 October 2024, Santiago de Compostela, Spain, 2024

Dual Stream Fusion U-Net Transformers for 3D Medical Image Segmentation.
Proceedings of the IEEE International Conference on Big Data and Smart Computing, 2024

2023
COMA: efficient structure-constrained molecular generation using contractive and margin losses.
J. Cheminformatics, December, 2023

SELF-EdiT: Structure-constrained molecular optimisation using SELFIES editing transformer.
Appl. Intell., November, 2023

DARK: Deep automatic Redis knobs tuning system depending on the persistence method.
Expert Syst. Appl., July, 2023

ReBADD-SE: Multi-objective molecular optimisation using SELFIES fragment and off-policy self-critical sequence training.
Comput. Biol. Medicine, May, 2023

AOBERT: All-modalities-in-One BERT for multimodal sentiment analysis.
Inf. Fusion, April, 2023

NCMD: Node2vec-Based Neural Collaborative Filtering for Predicting MiRNA-Disease Association.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022
Improvement of RocksDB Performance via Large-Scale Parameter Analysis and Optimization.
J. Inf. Process. Syst., 2022

DeepGate: Global-local decomposition for multivariate time series modeling.
Inf. Sci., 2022

RTune: a RocksDB tuning system with deep genetic algorithm.
Proceedings of the GECCO '22: Genetic and Evolutionary Computation Conference, Boston, Massachusetts, USA, July 9, 2022

2021
OurRocks: Offloading Disk Scan Directly to GPU in Write-Optimized Database System.
IEEE Trans. Computers, 2021

Binding affinity prediction for protein-ligand complex using deep attention mechanism based on intermolecular interactions.
BMC Bioinform., 2021

StackDA: A Stacked Dual Attention Neural Network for Multivariate Time-Series Forecasting.
IEEE Access, 2021

ARMemNet: autoregressive memory networks for multivariate time series forecasting.
Proceedings of the SAC '21: The 36th ACM/SIGAPP Symposium on Applied Computing, 2021

MolBit: De novo Drug Design via Binary Representations of SMILES for avoiding the Posterior Collapse Problem.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
IMIPMF: Inferring miRNA-disease interactions using probabilistic matrix factorization.
J. Biomed. Informatics, 2020

Combinatorial feature embedding based on CNN and LSTM for biomedical named entity recognition.
J. Biomed. Informatics, 2020

Prediction of Alzheimer's disease based on deep neural network by integrating gene expression and DNA methylation dataset.
Expert Syst. Appl., 2020

TLSM: Tiered Log-Structured Merge-Tree Utilizing Non-Volatile Memory.
IEEE Access, 2020

2019
A write-friendly approach to manage namespace of Hadoop distributed file system by utilizing nonvolatile memory.
J. Supercomput., 2019

ADC: Advanced document clustering using contextualized representations.
Expert Syst. Appl., 2019

PMAMCA: prediction of microRNA-disease association utilizing a matrix completion approach.
BMC Syst. Biol., 2019

A scalable and persistent key-value store using non-volatile memory.
Proceedings of the 34th ACM/SIGAPP Symposium on Applied Computing, 2019

LESS: Logging Exploiting SnapShot.
Proceedings of the IEEE International Conference on Big Data and Smart Computing, 2019

2018
MV-FTL: An FTL That Provides Page-Level Multi-Version Management.
IEEE Trans. Knowl. Data Eng., 2018

GSEH: A Novel Approach to Select Prostate Cancer-Associated Genes Using Gene Expression Heterogeneity.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Selective I/O Bypass and Load Balancing Method for Write-Through SSD Caching in Big Data Analytics.
IEEE Trans. Computers, 2018

Classifying malwares for identification of author groups.
Concurr. Comput. Pract. Exp., 2018

2017
Advanced Block Nested Loop Join for Extending SSD Lifetime.
IEEE Trans. Knowl. Data Eng., 2017

IMA: Identifying disease-related genes using MeSH terms and association rules.
J. Biomed. Informatics, 2017

Improved prediction of breast cancer outcome by identifying heterogeneous biomarkers.
Bioinform., 2017

CATS: a big network clustering algorithm based on triangle structures.
Proceedings of the Symposium on Applied Computing, 2017

LIF: a method to infer disease-gene relationships using literature data and impact factor.
Proceedings of the Symposium on Applied Computing, 2017

Machine Learning based Performance Modeling of Flash SSDs.
Proceedings of the 2017 ACM on Conference on Information and Knowledge Management, 2017

SSL: Inferring disease-related genes using sentence structure and literature data.
Proceedings of the 2017 IEEE International Conference on Big Data and Smart Computing, 2017

2016
External Mergesort for Flash-Based Solid State Drives.
IEEE Trans. Computers, 2016

Efficient processing of continuous queries utilizing F-relationship in stock databases.
Comput. Sci. Inf. Syst., 2016

Corrigendum to "A literature-driven method to calculate similarities among diseases" [Comput. Methods Programs Biomed. (2015) 108-122].
Comput. Methods Programs Biomed., 2016

DSS: A biclustering method to identify diverse and state specific gene modules in gene expression data.
Proceedings of the 2016 IEEE International Conference on Systems, Man, and Cybernetics, 2016

Optimization of a multiversion index on SSDs to improve system performance.
Proceedings of the 2016 IEEE International Conference on Systems, Man, and Cybernetics, 2016

Optimizing hash partitioning for solid state drives.
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 2016

IDO: inferring describable disease-gene relationships using opinion sentences.
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 2016

Take me to SSD: a hybrid block-selection method on HDFS based on storage type.
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 2016

Discovering disease-associated drugs using web crawl data.
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 2016

A method for obtaining rich data from PubMed using SVM.
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 2016

Recommend alternative drugs to minimize side-effect using generic name of drug.
Proceedings of the Sixth International Conference on Emerging Databases: Technologies, 2016

Replica parallelism to utilize the granularity of data.
Proceedings of the Sixth International Conference on Emerging Databases: Technologies, 2016

On Exploiting Static and Dynamic Features in Malware Classification.
Proceedings of the Big Data Technologies and Applications - 7th International Conference, 2016

2015
LGscore: A method to identify disease-related genes using biological literature and Google data.
J. Biomed. Informatics, 2015

BulkAligner: A novel sequence alignment algorithm based on graph theory and Trinity.
Inf. Sci., 2015

Inverted index maintenance strategy for flashSSDs: Revitalization of in-place index update strategy.
Inf. Syst., 2015

A literature-driven method to calculate similarities among diseases.
Comput. Methods Programs Biomed., 2015

Inference of disease-specific gene interaction network using a Bayesian network learned by genetic algorithm.
Proceedings of the 30th Annual ACM Symposium on Applied Computing, 2015

2014
AS B-tree: A Study of an Efficient B+-tree for SSDs.
J. Inf. Sci. Eng., 2014

Shape-based retrieval of CNV regions in read coverage data.
Int. J. Data Min. Bioinform., 2014

MPSearch: Multi-Path Search for Tree-based Indexes to Exploit Internal Parallelism of Flash SSDs.
IEEE Data Eng. Bull., 2014

TILD: A Strategy to Identify Cancer-related Genes Using Title Information in Literature Data.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

Discovering phenotype specific gene module using a novel biclustering algorithm in colorectal cancer.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Improved method for protein complex detection using bottleneck proteins.
BMC Medical Informatics Decis. Mak., 2013

CORE: Common Region Extension Based Multiple Protein Structure Alignment for Producing Multiple Solution.
J. Comput. Sci. Technol., 2013

Preface.
J. Comput. Sci. Technol., 2013

One-dimensional spatial join processing using a DOT-based index structure.
Comput. Syst. Sci. Eng., 2013

ICP: A novel approach to predict prognosis of prostate cancer with inner-class clustering of gene expression data.
Comput. Biol. Medicine, 2013

Impact of TGF-b on breast cancer from a quantitative proteomic analysis.
Comput. Biol. Medicine, 2013

2012
CNV detection method optimized for high-resolution arrayCGH by normality test.
Comput. Biol. Medicine, 2012

Identification of functional CNV region networks using a CNV-gene mapping algorithm in a genome-wide scale.
Bioinform., 2012

Protein complex prediction via bottleneck-based graph partitioning.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

2011
B+-tree Index Optimization by Exploiting Internal Parallelism of Flash-based Solid State Drives.
Proc. VLDB Endow., 2011

HapEdit: an accuracy assessment viewer for haplotype assembly using massively parallel DNA-sequencing technologies.
Nucleic Acids Res., 2011

Noise-robust algorithm for identifying functionally associated biclusters from gene expression data.
Inf. Sci., 2011

Extraction of Informative Genes from Multiple Microarray Data Integrated by Rank-Based Approach.
IEICE Trans. Inf. Syst., 2011

TC-VGC: A Tumor Classification System using Variations in Genes' Correlation.
Comput. Methods Programs Biomed., 2011

Integrative gene network construction for predicting a set of complementary prostate cancer genes.
Bioinform., 2011

Construction of a blog network based on information diffusion.
Proceedings of the 2011 ACM Symposium on Applied Computing (SAC), TaiChung, Taiwan, March 21, 2011

Protein Complex Discovery from Protein Interaction Network with High False-Positive Rate.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2011

2010
Microarray Data Classifier Consisting of k-Top-Scoring Rank-Comparison Decision Rules With a Variable Number of Genes.
IEEE Trans. Syst. Man Cybern. Part C, 2010

Efficient processing of spatial joins with DOT-based indexing.
Inf. Sci., 2010

Yet another write-optimized DBMS layer for flash-based solid state storage.
Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010

A novel cancer classifier based on differentially expressed gene network.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
A B-Tree index extension to enhance response time and the life cycle of flash memory.
Inf. Sci., 2009

A stock recommendation system exploiting rule discovery in stock databases.
Inf. Softw. Technol., 2009

HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome.
Bioinform., 2009

A novel approach to detect copy number variation using segmentation and genetic algorithm.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

A Computational Approach to Detect CNVs Using High-throughput Sequencing.
Proceedings of the Ninth IEEE International Conference on Bioinformatics and Bioengineering, 2009

2008
Direct integration of microarrays for selecting informative genes and phenotype classification.
Inf. Sci., 2008

Image retrieval model based on weighted visual features determined by relevance feedback.
Inf. Sci., 2008

Privacy preserving data mining of sequential patterns for network traffic data.
Inf. Sci., 2008

Physical Database Design for Efficient Time-Series Similarity Search.
IEICE Trans. Commun., 2008

Extraction of Informative Genes from Integrated Microarray Data.
Proceedings of the Foundations of Intelligent Systems, 17th International Symposium, 2008

An Efficient Hash Index Structure for Solid State Disks.
Proceedings of the 2008 International Conference on Information & Knowledge Engineering, 2008

Rule Discovery and Matching in Stock Databases.
Proceedings of the 32nd Annual IEEE International Computer Software and Applications Conference, 2008

RN-Cluster: Discovering Coherent Biclusters Which is Robust to Noise.
Proceedings of the International Conference on Biocomputation, 2008

A novel evolutionary algorithm for bi-clustering of gene expression data based on the Order Preserving Sub-Matrix (OPSM) constraint.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007
A multi-dimensional indexing approach for timestamped event sequence matching.
Inf. Sci., 2007

An efficient location encoding method for moving objects using hierarchical administrative district and road network.
Inf. Sci., 2007

ACE-INPUTS: A Cost-Effective Intelligent Public Transportation System.
IEICE Trans. Inf. Syst., 2007

Towards Efficient Searching on the Secondary Structure of Protein Sequences.
Fundam. Informaticae, 2007

SBASS: Segment based approach for subsequence searches in sequence databases.
Comput. Syst. Sci. Eng., 2007

A Practical Method for Approximate Subsequence Search in DNA Databases.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2007

k-TSN(k-Top Scoring N): Microarray Data Classification Based on Rank-Comparison Decision Rules.
Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

2006
Shape-based retrieval in time-series databases.
J. Syst. Softw., 2006

An efficient approach for sequence matching in large DNA databases.
J. Inf. Sci., 2006

Prefix-querying with an L<sub>1</sub> distance metric for time-series subsequence matching under time warping.
J. Inf. Sci., 2006

An efficient DNA sequence searching method using position specific weighting scheme.
J. Inf. Sci., 2006

Building a Classifier for Integrated Microarray Datasets through Two-Stage Approach.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
A Novel Indexing Method for Efficient Sequence Matching in Large DNA Database Environment.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2005

A DNA Index Structure Using Frequency and Position Information of Genetic Alphabet.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2005

CSI: Clustered Segment Indexing for Efficient Approximate Searching on the Secondary Structure of Protein Sequences.
Proceedings of the Foundations of Intelligent Systems, 15th International Symposium, 2005

Effective and scalable solutions for mixed and split citation problems in digital libraries.
Proceedings of the IQIS 2005, 2005

An Index-Based Method for Timestamped Event Sequence Matching.
Proceedings of the Database and Expert Systems Applications, 16th International Conference, 2005

An Efficient Location Encoding Method Based on Hierarchical Administrative District.
Proceedings of the Database and Expert Systems Applications, 16th International Conference, 2005

2004
Efficient processing of similarity search under time warping in sequence databases: an index-based approach.
Inf. Syst., 2004

2003
Similarity search of time-warped subsequences via a suffix tree.
Inf. Syst., 2003

Similarity-Based Subsequence Search in Image Sequence Databases.
Int. J. Image Graph., 2003

ViST: A Dynamic Index Method for Querying XML Data by Tree Structures.
Proceedings of the 2003 ACM SIGMOD International Conference on Management of Data, 2003

Indexing Weighted-Sequences in Large Databases.
Proceedings of the 19th International Conference on Data Engineering, 2003

Optimal Construction of Multi-Dimensional Indexes in Time-Series Databases: A Physical Database Design Approach.
Proceedings of the ISCA 18th International Conference Computers and Their Applications, 2003

2002
Shape-based retrieval of similar subsequences in time-series databases.
Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

2001
Discovering and Matching Elastic Rules from Sequence Databases.
Fundam. Informaticae, 2001

Segment-based approach for subsequence searches in sequence databases.
Proceedings of the 2001 ACM Symposium on Applied Computing (SAC), 2001

An Index-Based Approach for Similarity Search Supporting Time Warping in Large Sequence Databases.
Proceedings of the 17th International Conference on Data Engineering, 2001

2000
Efficient Searches for Similar Subsequences of Different Lengths in Sequence Databases.
Proceedings of the 16th International Conference on Data Engineering, San Diego, California, USA, February 28, 2000


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