Sandrine Dudoit

According to our database, Sandrine Dudoit authored at least 14 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Improving replicability in single-cell RNA-Seq cell type discovery with Dune.

Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit

BMC Bioinform., December, 2024

2023

Cross-Validated Loss-based Covariance Matrix Estimator Selection in High Dimensions.

Philippe Boileau, Nima S. Hejazi, Mark J. van der Laan, Sandrine Dudoit

J. Comput. Graph. Stat., April, 2023

2021

cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R.

Philippe Boileau, Nima S. Hejazi, Brian Collica, Mark J. van der Laan, Sandrine Dudoit

J. Open Source Softw., 2021

2020

scPCA: A toolbox for sparse contrastive principal component analysis in R.

Philippe Boileau, Nima S. Hejazi, Sandrine Dudoit

J. Open Source Softw., 2020

Exploring high-dimensional biological data with sparse contrastive principal component analysis.

Philippe Boileau, Nima S. Hejazi, Sandrine Dudoit

Bioinform., 2020

2019

Filtering procedures for untargeted LC-MS metabolomics data.

Courtney Schiffman, Lauren Petrick, Kelsi Perttula, Yukiko Yano, Henrik Carlsson, Todd Whitehead, Catherine Metayer, Josie Hayes, Stephen M. Rappaport, Sandrine Dudoit

BMC Bioinform., 2019

2018

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom

PLoS Comput. Biol., 2018

2011

GC-Content Normalization for RNA-Seq Data.

Davide Risso, Katja Schwartz, Gavin Sherlock, Sandrine Dudoit

BMC Bioinform., 2011

2010

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.

James H. Bullard, Elizabeth Purdom, Kasper D. Hansen, Sandrine Dudoit

BMC Bioinform., 2010

2009

GenomeGraphs: integrated genomic data visualization with R.

Steffen Durinck, James H. Bullard, Paul T. Spellman, Sandrine Dudoit

BMC Bioinform., 2009

2008

A general framework for statistical performance comparison of evolutionary computation algorithms.

David Shilane, Jarno Martikainen, Sandrine Dudoit, Seppo J. Ovaska

Inf. Sci., 2008

2006

Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data.

Sündüz Keles, Mark J. van der Laan, Sandrine Dudoit, Simon E. Cawley

J. Comput. Biol., 2006

2003

Loss-based estimation with cross-validation: applications to microarray data analysis.

Sandrine Dudoit, Mark J. van der Laan, Sündüz Keles, Annette M. Molinaro, Sandra E. Sinisi, Siew Leng Teng

SIGKDD Explor., 2003

Bagging to Improve the Accuracy of A Clustering Procedure.

Sandrine Dudoit, Jane Fridlyand

Bioinform., 2003