Sandor Vajda
Orcid: 0000-0003-1540-8220
According to our database1,
Sandor Vajda
authored at least 46 papers
between 1984 and 2024.
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Bibliography
2024
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites.
J. Chem. Inf. Model., 2024
J. Chem. Inf. Model., 2024
2023
Frontiers Bioinform., May, 2023
2022
J. Chem. Inf. Model., 2022
2020
Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery.
J. Chem. Inf. Model., 2020
2016
J. Comput. Chem., 2016
Bioinform., 2016
2015
J. Chem. Inf. Model., 2015
Accounting for observed small angle X-ray scattering profile in the protein-protein docking server cluspro.
J. Comput. Chem., 2015
2014
Evidence of Conformational Selection Driving the Formation of Ligand Binding Sites in Protein-Protein Interfaces.
PLoS Comput. Biol., 2014
J. Chem. Inf. Model., 2014
Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014
A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014
2013
FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots.
Bioinform., 2013
A new distributed algorithm for side-chain positioning in the process of protein docking.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013
2012
Nucleic Acids Res., 2012
Relationship between Hot Spot Residues and Ligand Binding Hot Spots in Protein-Protein Interfaces.
J. Chem. Inf. Model., 2012
Hot Spot Analysis for Driving the Development of Hits into Leads in Fragment-Based Drug Discovery.
J. Chem. Inf. Model., 2012
FTSite: high accuracy detection of ligand binding sites on unbound protein structures.
Bioinform., 2012
Bioinform., 2012
A message passing approach to Side Chain Positioning with applications in protein docking refinement.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
2009
Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase.
J. Comput. Aided Mol. Des., 2009
Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques.
Bioinform., 2009
2008
Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes.
PLoS Comput. Biol., 2008
Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.
Bioinform., 2008
Clustering versus Scoring for the Identification of Near-Native Poses in Protein-Ligand Docking.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
2007
SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking.
IEEE Trans. Autom. Control., 2007
Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking.
Proceedings of the 46th IEEE Conference on Decision and Control, 2007
2006
Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2005
Nucleic Acids Res., 2005
A Semi-Definite programming-based Underestimation method for global optimization in molecular docking.
Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005
2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
ClusPro: an automated docking and discrimination method for the prediction of protein complexes.
Bioinform., 2004
2003
Bioinform., 2003
Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment.
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003
2002
Semiglobal simplex optimization and its application to determining the preferred solvation sites of proteins.
J. Comput. Chem., 2002
1999
1996
1994
Finite-State and Reduced-Parameter Representations of Protein Backbone Conformations.
J. Comput. Chem., 1994
1993
1987
Autom., 1987
1984