Sandhya Xirasagar

According to our database, Sandhya Xirasagar authored at least 9 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.

Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu

J. Biomed. Informatics, 2022

ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data.

Michael Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton L. Dalgard, Stephen J. Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo, Uzi Vishkin, Corey Watson, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2022

2021

PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology.

Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu

Bioinform., 2021

2018

Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research System.

Daniel Veltri, Zhiwen Li, Sandhya Xirasagar, Andrew J. Oler, Xi Cheng, Ke Huang, Jason Barnett, Lingwen Zhang, Octavio Juarez Espinosa, Yongjie Fan, Morgan Similuk, Magdalena Walkiewicz, Celine Hong, Joyce Johnson, Joshua D. Milner

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

The Papillomavirus Episteme: a major update to the papillomavirus sequence database.

Koenraad Van Doorslaer, Zhiwen Li, Sandhya Xirasagar, Piet Maes, David Kaminsky, David Liou, Qiang Sun, Ramandeep Kaur, Yentram Huyen, Alison A. McBride

Nucleic Acids Res., 2017

2013

The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis.

Koenraad Van Doorslaer, Qina Tan, Sandhya Xirasagar, Sandya Bandaru, Vivek Gopalan, Yasmin Mohamoud, Yentram Huyen, Alison A. McBride

Nucleic Acids Res., 2013

2008

CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.

Michael D. Waters, Stanley Stasiewicz, B. Alex Merrick, Kenneth B. Tomer, Pierre R. Bushel, Richard S. Paules, Nancy Stegman, Gerald Nehls, Kenneth J. Yost III, C. Harris Johnson, Scott F. Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng Huang, Paul Boyer, Denny D. Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, Jennifer Fostel

Nucleic Acids Res., 2008

2006

Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application.

Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters

Bioinform., 2006

2004

CEBS object model for systems biology data, SysBio-OM.

Sandhya Xirasagar, Scott F. Gustafson, B. Alex Merrick, Kenneth B. Tomer, Stanley Stasiewicz, Denny D. Chan, Kenneth J. Yost III, John R. Yates III, Susan Sumner, Nianqing Xiao, Michael D. Waters

Bioinform., 2004