Sanchit Misra

Orcid: 0000-0001-7863-858X

According to our database1, Sanchit Misra authored at least 45 papers between 2008 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2024
Generative Active Learning for the Search of Small-molecule Protein Binders.
CoRR, 2024

2023
PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design.
CoRR, 2023

DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis.
Proceedings of the 50th Annual International Symposium on Computer Architecture, 2023

2022
Accelerating minimap2 for long-read sequencing applications on modern CPUs.
Nat. Comput. Sci., 2022

Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning and HPC Workloads.
Frontiers Appl. Math. Stat., 2022

Accelerating Barnes-Hut t-SNE Algorithm by Efficient Parallelization on Multi-Core CPUs.
CoRR, 2022

DistGNN-MB: Distributed Large-Scale Graph Neural Network Training on x86 via Minibatch Sampling.
CoRR, 2022

Accelerating Deep Learning based Identification of Chromatin Accessibility from noisy ATAC-seq Data.
Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022

2021
Efficient and Generic 1D Dilated Convolution Layer for Deep Learning.
CoRR, 2021

Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning Workloads.
CoRR, 2021

DistGNN: scalable distributed training for large-scale graph neural networks.
Proceedings of the International Conference for High Performance Computing, 2021

Tensor processing primitives: a programming abstraction for efficiency and portability in deep learning workloads.
Proceedings of the International Conference for High Performance Computing, 2021

GenomicsBench: A Benchmark Suite for Genomics.
Proceedings of the IEEE International Symposium on Performance Analysis of Systems and Software, 2021

2020
Benchmarking Learned Indexes.
Proc. VLDB Endow., 2020

Deep Graph Library Optimizations for Intel(R) x86 Architecture.
CoRR, 2020

The Case for a Learned Sorting Algorithm.
Proceedings of the 2020 International Conference on Management of Data, 2020

2019
LISA: Towards Learned DNA Sequence Search.
CoRR, 2019

Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems.
Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019

Accelerating Sequence Alignment to Graphs.
Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019

2018
Optimizing high performance distributed memory parallel hash tables for DNA <i>k</i>-mer counting.
Proceedings of the International Conference for High Performance Computing, 2018

Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis.
Proceedings of the 27th International Conference on Parallel Architectures and Compilation Techniques, 2018

2017
Eliminating Irregularities of Protein Sequence Search on Multicore Architectures.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017

2016
Scaling up Hartree-Fock calculations on Tianhe-2.
Int. J. High Perform. Comput. Appl., 2016

muBLASTP: database-indexed protein sequence search on multicore CPUs.
BMC Bioinform., 2016

2015
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel®Xeon Phi™ Coprocessor.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Dtree: Dynamic Task Scheduling at Petascale.
Proceedings of the High Performance Computing - 30th International Conference, 2015

2014
Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks.
Proceedings of the International Conference for High Performance Computing, 2014

Parallel Mutual Information Based Construction of Whole-Genome Networks on the Intel (R) Xeon Phi (TM) Coprocessor.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014

2012
Lung cancer survival prediction using ensemble data mining on SEER data.
Sci. Program., 2012

Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.
BMC Bioinform., 2012

2011
Accelerating data mining workloads: current approaches and future challenges in system architecture design.
WIREs Data Mining Knowl. Discov., 2011

Parallel pairwise statistical significance estimation of local sequence alignment using Message Passing Interface library.
Concurr. Comput. Pract. Exp., 2011

Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.
Bioinform., 2011

A lung cancer outcome calculator using ensemble data mining on SEER data.
Proceedings of the Tenth International Workshop on Data Mining in Bioinformatics, 2011

Efficient pairwise statistical significance estimation for local sequence alignment using GPU.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: A lung cancer mortality risk calculator based on SEER data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: Risk prediction for post-operative adverse outcomes in colorectal cancer surgery.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
FANGS: high speed sequence mapping for next generation sequencers.
Proceedings of the 2010 ACM Symposium on Applied Computing (SAC), 2010

pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment.
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010

2009
Mining Protein Interactions from Text Using Convolution Kernels.
Proceedings of the New Frontiers in Applied Data Mining, 2009

2008
Temperature-aware test scheduling for multiprocessor systems-on-chip.
Proceedings of the 2008 International Conference on Computer-Aided Design, 2008

An Efficient FPGA Implementation of Principle Component Analysis based Network Intrusion Detection System.
Proceedings of the Design, Automation and Test in Europe, 2008

High-Performance Distributed Data Mining.
Proceedings of the Next Generation of Data Mining., 2008


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