Samson W. Tu

Proceedings of the AMIA 2022, 2022

A Goal-Oriented Methodology for Treatment of Patients with Multimorbidity - Goal Comorbidities (GoCom) Proof-of-Concept Demonstration.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence in Medicine, 2022

2021

Towards a framework for comparing functionalities of multimorbidity clinical decision support: A literature-based feature set and benchmark cases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Towards a goal-oriented methodology for clinical-guideline-based management recommendations for patients with multimorbidity: GoCom and its preliminary evaluation.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2020

Toward a Harmonized WHO Family of International Classifications Content Model.

[BibT_eX]

[DOI]

Jeewani Anupama Ginige

Catherine Sykes

Can Çelik

Robert Jakob

Proceedings of the AMIA 2020, 2020

GoCom - A Goal-oriented Methodology for Treatment of Patients with Multimorbidity and Its Preliminary Evaluation.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

2019

Detecting and mitigating clinical guideline interactions in multimorbidity patients using computer-interpretable guidelines and AEOLUS.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2019, 2019

A Method for Goal-Oriented Guideline Modeling in PROforma and Its Preliminary Evaluation.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence in Medicine: Knowledge Representation and Transparent and Explainable Systems, 2019

2018

Selecting Test Cases from the Electronic Health Record for Software Testing of Knowledge-Based Clinical Decision Support Systems.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

Goal-driven management of interacting clinical guidelines for multi-morbidity patients.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

2017

Use of ontology structure and Bayesian models to aid the crowdsourcing of ICD-11 sanctioning rules.

[BibT_eX]

[DOI]

Robert J. G. Chalmers

J. Biomed. Informatics, 2017

An ontology-driven tool for structured data acquisition using Web forms.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2017

High-Risk Drug-Drug Interactions Between Clinical Practice Guidelines for Management of Chronic Conditions.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2017

2016

Test Case Selection in Pre-Deployment Testing of Complex Clinical Decision Support Systems.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2016

Automating Performance Measures and Clinical Practice Guidelines: Differences and Complementarities.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Automating Guidelines for Clinical Decision Support: Knowledge Engineering and Implementation.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

2015

Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2015

Modeling and tools for supporting post-coordination in ICD-11.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Biomedical Ontology, 2015

Structured data acquisition with ontology-based web forms.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Biomedical Ontology, 2015

OWL-based form generation and structured data acquisition.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Biomedical Ontology, 2015

Using a Clinical Knowledge Base to Assess Comorbidity Interrelatedness Among Patients with Multiple Chronic Conditions.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Integrating an Externally Developed Clinical Decision Support (CDS) System with an Existing Electronic Health Record (EHR) System at VA.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Automating Guidelines for Clinical Decision Support (CDS): A Categorization of Knowledge Engineering and Implementation Decisions.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

2014

The Ontology of Clinical Research (OCRe): An informatics foundation for the science of clinical research.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2014

Crowdsourcing ICD-11 Sanctioning Rules.

[BibT_eX]

[DOI]

Robert J. G. Chalmers

Proceedings of the AMIA 2014, 2014

Encoding Performance Measures For Automated Quality Assessment.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Automating Performance Measures and Clinical Practice Guidelines: Differences and Complementarities.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

2013

Creating a MRSA Ontology to Support Categorization of MRSA Infections.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

2012

Experiences with Multilingual Modeling in the Development of the International Classification of Traditional Medicine Ontology.

[BibT_eX]

[DOI]

Proceedings of the 3rd Workshop on the Multilingual Semantic Web, 2012

The Template Instance Pattern.

[BibT_eX]

[DOI]

Csongor Nyulas

Tania Tudorache

Proceedings of the 3rd Workshop on Ontology Patterns, Boston, USA, November 12, 2012, 2012

Development of a Taxonomy of Setting-Specific Factors for Adaptation of Clinical Decision Support Rules.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Ontology-Based Federated Data Access to Human Studies Information.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Deriving an Abstraction Network to Support Quality Assurance in OCRe.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

The Implementer's Workbench: Incorporating Site-Specific Factors into Clinical Decision Support Rules Using an ArdenML Framework.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Application of Preference-Oriented Decision Making to Multimorbidity for Computerized Decision Support: Decision Analysis and Analytic Hierarchy.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

2011

A practical method for transforming free-text eligibility criteria into computable criteria.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2011

Web-based Exploration of Temporal Data in Biomedicine.

[BibT_eX]

Proceedings of the WEBIST 2011, 2011

SWEETInfo: a Web-Based System for Visualizing and Querying Temporal Data.

[BibT_eX]

[DOI]

Proceedings of the 5th International RuleML2011@BRF Challenge, 2011

Web-Based Querying and Temporal Visualization of Longitudinal Clinical Data.

[BibT_eX]

[DOI]

Amanda Richards

Susana B. Martins

Michael Uehara-Bingen

Amar K. Das

Proceedings of the Artificial Intelligence in Medicine, 2011

Reasoning with Effects of Clinical Guideline Actions Using OWL: AL Amyloidosis as a Case Study.

[BibT_eX]

[DOI]

Proceedings of the Knowledge Representation for Health-Care, 2011

2010

Formal representation of eligibility criteria: A literature review.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2010

A Typology for Modeling Processes in Clinical Guidelines and Protocols.

[BibT_eX]

[DOI]

Proceedings of the Security-Enriched Urban Computing and Smart Grid, 2010

2009

Design patterns for clinical guidelines.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 2009

Software-engineering challenges of building and deploying reusable problem solvers.

[BibT_eX]

[DOI]

Artif. Intell. Eng. Des. Anal. Manuf., 2009

Ontology driven data integration for autism research.

[BibT_eX]

[DOI]

Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

Extracting Cancer Quality Indicators from Electronic Medical Records: Evaluation of an Ontology-Based Virtual Medical Record Approach.

[BibT_eX]

[DOI]

Wei-Nchih Lee

Amar K. Das

Proceedings of the AMIA 2009, 2009

A Bayesian Network Model for Analysis of Detection Performance in Surveillance Systems.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2009, 2009

2008

Model Formulation: Understanding Detection Performance in Public Health Surveillance: Modeling Aberrancy-detection Algorithms.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2008

Supporting Collaborative Ontology Development in Protégé.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2008, 7th International Semantic Web Conference, 2008

An Ontology-Driven Framework for Deploying JADE Agent Systems.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE/WIC/ACM International Conference on Intelligent Agent Technology, 2008

Using an Integrated Ontology and Information Model for Querying and Reasoning about Phenotypes: The Case of Autism.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2008, 2008

Predicting Outbreak Detection in Public Health Surveillance: Quantitative Analysis to Enable Evidence-Based Method Selection.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2008, 2008

Developing a Web-Based Application using OWL and SWRL.

[BibT_eX]

[DOI]

Proceedings of the AI Meets Business Rules and Process Management, 2008

2007

Synthesis of Research Paper: The SAGE Guideline Model: Achievements and Overview.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2007

Querying the Semantic Web with SWRL.

[BibT_eX]

[DOI]

Proceedings of the Advances in Rule Interchange and Applications, International Symposium, 2007

Efficiently Querying Relational Databases Using OWL and SWRL.

[BibT_eX]

[DOI]

Proceedings of the Web Reasoning and Rule Systems, First International Conference, 2007

Creating Interoperable Guidelines: Requirements of Vocabulary Standards in Immunization Decision Support.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Guideline Models, Process Specification, and Workflow.

[BibT_eX]

[DOI]

Joan Albert López-Vallverdú

Proceedings of the Business Process Management Workshops, 2007

Document-Oriented Views of Guideline Knowledge Bases.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence in Medicine, 2007

Mining Hospital Data to Learn SDA* Clinical Algorithms.

[BibT_eX]

[DOI]

David Riaño

Proceedings of the Knowledge Management for Health Care Procedures, 2007

Using Semantic Web Technologies for Knowledge-Driven Querying of Biomedical Data.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence in Medicine, 2007

2006

Use of Declarative Statements in Creating and Maintaining Computer-Interpretable Knowledge Bases for Guideline-Based Care.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

Structuring Order Sets for Interoperable Distribution.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

Offline Testing of the ATHENA Hypertension Decision Support System Knowledge Base to Improve the Accuracy of Recommendations.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

Partnerships in Innovation: How We Accomplished the Objectives of the SAGE Project.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

Medical Arguments in an Automated Health Care System.

[BibT_eX]

[DOI]

Proceedings of the Argumentation for Consumers of Healthcare, 2006

2005

protégé as a vehicle for developing medical terminological systems.

[BibT_eX]

[DOI]

Int. J. Hum. Comput. Stud., 2005

Supporting Rule System Interoperability on the Semantic Web with SWRL.

[BibT_eX]

[DOI]

Proceedings of the Semantic Web - ISWC 2005, 4th International Semantic Web Conference, 2005

Semantic Clinical Guideline Documents.

[BibT_eX]

[DOI]

Henrik Eriksson

Proceedings of the AMIA 2005, 2005

2004

Design and implementation of the GLIF3 guideline execution engine.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2004

GLIF3: a representation format for sharable computer-interpretable clinical practice guidelines.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2004

Review Paper: The InterMed Approach to Sharable Computer-interpretable Guidelines: A Review.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2004

Application of Information Technology: Translating Research into Practice: Organizational Issues in Implementing Automated Decision Support for Hypertension in Three Medical Centers.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2004

Modeling Guidelines for Integration into Clinical Workflow.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

Executing Clinical Practice Guidelines using the SAGE Execution Engine.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

Modeling and Analyzing Biomedical Processes using Workflow/Petri Net Models and Tools.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

Detailed Clinical Models for Sharable, Executable Guidelines.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

The SAGE Guideline Modeling: Motivation and Methodology.

[BibT_eX]

[DOI]

James R. Campbell

Proceedings of the Computer-based Support for Clinical Guidelines and Protocols, 2004

2003

Research Paper: Comparing Computer-interpretable Guideline Models: A Case-study Approach.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2003

The evolution of Protégé: an environment for knowledge-based systems development.

[BibT_eX]

[DOI]

Int. J. Hum. Comput. Stud., 2003

GESDOR - A Generic Execution Model for Sharing of Computer-Interpretable Clinical Practice Guidelines.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

The Structure of Guideline Recommendations: A Synthesis.

[BibT_eX]

[DOI]

James R. Campbell

Proceedings of the AMIA 2003, 2003

A Knowledge-Acquisition Wizard to Encode Guidelines.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

Protégé-2000: An Open-Source Ontology-Development and Knowledge-Acquisition Environment: AMIA 2003 Open Source Expo.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

2002

Patient Safety in Guideline-Based Decision Support for Hypertension Management: ATHENA DSS.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2002

Representation primitives, process models and patient data in computer-interpretable clinical practice guidelines: : A literature review of guideline representation models.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2002

A Typology for Modeling Processes in Clinical Guidelines and Protocols.

[BibT_eX]

[DOI]

Peter D. Johnson

Proceedings of the AMIA 2002, 2002

Use of Protégé-2000 to Encode Clinical Guidelines.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Support for guideline development through error classification and constraint checking.

[BibT_eX]

[DOI]

Christel Mottur-Pilson

Edward H. Shortliffe

Robert A. Greenes

Proceedings of the AMIA 2002, 2002

The Chronus II temporal database mediator.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Knowledge-based bioterrorism surveillance.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Standards-based Sharable Active Guideline Environment (SAGE): A Project to Develop a Universal Framework for Encoding and Disseminating Electronic Clinical Practice Guidelines.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

The helpful patient record system: problem oriented and knowledge based.

[BibT_eX]

[DOI]

Elisabeth Bayegan

Proceedings of the AMIA 2002, 2002

2001

Sharable Representation of Clinical Guidelines in GLIF: Relationship to the Arden Syntax.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2001

Toward a Representation Format for Sharable Clinical Guidelines.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2001

Representation of Clinical Practice Guidelines for Computer-Based Implementations.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Modeling Data and Knowledge in the EON Guideline Architecture.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Building an Explanation Function for a Hypertension Decision-Support System.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Handling Expressiveness and Comprehensibility Requirements in GLIF3.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

RASTA: A Distributed Temporal Abstraction System to Facilitate Knowledge-Driven Monitoring of Clinical Databases.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Achieving Reuse of Computable Guideline Systems.

[BibT_eX]

[DOI]

Peter D. Johnson

Neill Jones

Proceedings of the MEDINFO 2001, 2001

Sharable Computer-based Clinical Practice Guidelines: Rationale, Obstacles, Approaches, and Prospects.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Integration of textual guideline documents with formal guideline knowledge bases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

Using features of Arden Syntax with object-oriented medical data models for guideline modeling.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

A Client-Server Framework for Deploying a Decision-support System in a Resource-constrained Environment.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

A virtual medical record for guideline-based decision support.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

Preliminary Evaluation of a Guideline Classification System.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

Interface of Inference Models with Concept and Medical Record Models.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence Medicine, 2001

2000

Representation Formalisms and Computational Methods for Modeling Guideline-Based Patient Care.

[BibT_eX]

[DOI]

Proceedings of the Computer-Based Support for Clinical Guidelines and Protocols, 2000

A Three-layer Domain Ontology for Guideline Representation and Sharing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

From guideline modeling to guideline execution: defining guideline-based decision-support services.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Explanations for a Hypertension Decision Support System.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

GLIF3: the evolution of a guideline representation format.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Representation of temporal indeterminacy in clinical databases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Representation of Nursing Guidelines Using the EON Guideline Model.

[BibT_eX]

[DOI]

Zhen Lin

Proceedings of the AMIA 2000, 2000

Using scenarios in chronic disease management guidelines for primary care.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Implementing clinical practice guidelines while taking account of changing evidence: ATHENA DSS, an easily modifiable decision-support system for managing hypertension in primary care.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Guideline classification to assist modeling, authoring, implementation and retrieval.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

1999

Integration of Temporal Reasoning and Temporal-Data Maintenance into a Reusable Database Mediator to Answer Abstract, Time-Oriented Queries: The Tzolkin System.

[BibT_eX]

[DOI]

J. Intell. Inf. Syst., 1999

A flexible approach to guideline modeling.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

The PRODIGY Knowledge Architecture Requirements for Chronic Disease Management in Primary Care.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Applying temporal joins to clinical databases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

EON 2.0: Enhanced Middleware for Automation of Protocol-Directed Therapy.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Integrating a modern knowledge-based system architecture with a legacy VA database: the ATHENA and EON projects at Stanford.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

1998

Research Paper: The GuideLine Interchange Format: A Model for Representing Guidelines.

[BibT_eX]

[DOI]

Edward Pattison-Gordon

Robert A. Greenes

Edward H. Shortliffe

G. Octo Barnett

J. Am. Medical Informatics Assoc., 1998

Episodic refinement of episodic skeletal-plan refinement.

[BibT_eX]

[DOI]

Int. J. Hum. Comput. Stud., 1998

A declarative explanation framework that uses a collection of visualization agents.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

1997

A temporal database mediator for protocol-based decision support.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

Theater-Style Demonstration: EON: CORBA-Based Middleware for Automation of Protocol-Directed Therapy.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

Domain Modeling with Integrated Ontologies: Principles for Reconciliation and Reuse.

[BibT_eX]

[DOI]

Aneel A. Advani

Proceedings of the AMIA 1997, 1997

1996

Synthesis of Research: EON: A Component-Based Approach to Automation of Protocol-Directed Therapy.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 1996

Reusable ontologies, knowledge-acquisition tools, and performance systems: PROTÉGÉ-II solutions to Sisyphus-2.

[BibT_eX]

[DOI]

Int. J. Hum. Comput. Stud., 1996

1995

Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision support.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 1995

Task Modeling with Reusable Problem-Solving Methods.

[BibT_eX]

[DOI]

Artif. Intell., 1995

A Component-Based Architecture for Automation of Protocol-Directed Therapy.

[BibT_eX]

[DOI]

Proceedings of the Artificial Intelligence Medicine, 1995

1994

Mapping domains to methods in support of reuse.

[BibT_eX]

[DOI]

Int. J. Hum. Comput. Stud., 1994

1993

Modeling tasks with mechanisms.

[BibT_eX]

[DOI]

Angel R. Puerta

Int. J. Intell. Syst., 1993

1992

A problem-solving model for episodic skeletal-plan refinement.

[BibT_eX]

[DOI]

Knowl. Acquis., 1992

Knowledge acquisition for temporal-abstraction mechanisms.

[BibT_eX]

[DOI]

Yuval Shahar

Knowl. Acquis., 1992

A multiple-method knowledge-acquisition shell for the automatic generation of knowledge-acquisition tools.

[BibT_eX]

[DOI]

Knowl. Acquis., 1992

Problem-Solving Models for Generation of Task-Specific Knowledge-Acquisition Tools.

[BibT_eX]