Sameer Velankar

Orcid: 0000-0002-8439-5964

Affiliations:
  • European Molecular Biology Laboratory, EMBL-EBI, Hinxton, UK


According to our database1, Sameer Velankar authored at least 41 papers between 2003 and 2024.

Collaborative distances:

Timeline

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Bibliography

2024
PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank.
Database J. Biol. Databases Curation, January, 2024

2023
PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank.
J. Cheminformatics, December, 2023

PDBImages: a command-line tool for automated macromolecular structure visualization.
Bioinform., December, 2023

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.
Nucleic Acids Res., January, 2023

2022
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Nucleic Acids Res., 2022

PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res., 2022

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.
Briefings Bioinform., 2022

2021
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.
Nucleic Acids Res., 2021

PDBeCIF: an open-source mmCIF/CIF parsing and processing package.
BMC Bioinform., 2021

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data.
Bioinform., 2021

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.
Briefings Bioinform., 2021

2020
BinaryCIF and CIFTools - Lightweight, efficient and extensible macromolecular data management.
PLoS Comput. Biol., 2020

PDBe-KB: a community-driven resource for structural and functional annotations.
Nucleic Acids Res., 2020

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res., 2020

PDBe: improved findability of macromolecular structure data in the PDB.
Nucleic Acids Res., 2020

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Bioinform., 2020

2019
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins.
Nucleic Acids Res., 2019

Finding enzyme cofactors in Protein Data Bank.
Bioinform., 2019

2018
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.
Nucleic Acids Res., 2018

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.
Database J. Biol. Databases Curation, 2018

Mol*: Towards a Common Library and Tools for Web Molecular Graphics.
Proceedings of the 1st Workshop on Molecular Graphics and Visual Analysis of Molecular Data, 2018

2016
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.
Nucleic Acids Res., 2016

2015
The complex portal - an encyclopaedia of macromolecular complexes.
Nucleic Acids Res., 2015

Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res., 2015

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank.
Bioinform., 2015

2014
PDBe: Protein Data Bank in Europe.
Nucleic Acids Res., 2014

2013
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource.
Nucleic Acids Res., 2013

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res., 2013

The EBI enzyme portal.
Nucleic Acids Res., 2013

UniChem: a unified chemical structure cross-referencing and identifier tracking system.
J. Cheminformatics, 2013

BioJS: an open source JavaScript framework for biological data visualization.
Bioinform., 2013

2012
PDBe: Protein Data Bank in Europe.
Nucleic Acids Res., 2012

2011
PDBe: Protein Data Bank in Europe.
Nucleic Acids Res., 2011

EMDataBank.org: unified data resource for CryoEM.
Nucleic Acids Res., 2011

2010
PDBe: Protein Data Bank in Europe.
Nucleic Acids Res., 2010

2008
Remediation of the protein data bank archive.
Nucleic Acids Res., 2008

2006
E-MSD: improving data deposition and structure quality.
Nucleic Acids Res., 2006

2005
E-MSD: an integrated data resource for bioinformatics.
Nucleic Acids Res., 2005

SOAP-based services provided by the European Bioinformatics Institute.
Nucleic Acids Res., 2005

2004
E-MSD: an integrated data resource for bioinformatics.
Nucleic Acids Res., 2004

2003
E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.
Nucleic Acids Res., 2003


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