Salem Malikic

According to our database, Salem Malikic authored at least 14 papers between 2015 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History.

Chih Hao Wu, Suraj Joshi, Welles Robinson, Paul F. Robbins, Russell Schwartz, Süleyman Cenk Sahinalp, Salem Malikic

Proceedings of the Research in Computational Molecular Biology, 2024

2022

Fast intratumor heterogeneity inference from single-cell sequencing data.

Can Kizilkale, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Chi-Ping Day, Glenn Merlino, Funda Ergün, Aydin Buluç, Süleyman Cenk Sahinalp, Salem Malikic

Nat. Comput. Sci., 2022

Vision for Bosnia and Herzegovina in Artificial Intelligence Age: Global Trends, Potential Opportunities, Selected Use-cases and Realistic Goals.

Zlatan Ajanovic, Emina Alickovic, Aida Brankovic, Sead Delalic, Eldar Kurtic, Salem Malikic, Adnan Mehonic, Hamza Merzic, Kenan Sehic, Bahrudin Trbalic

CoRR, 2022

2021

Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices.

Salem Malikic, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Mohammad Haghir Ebrahim-Abadi, Süleyman Cenk Sahinalp

J. Comput. Biol., 2021

2020

The evolutionary history of 2,658 cancers.

Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo

Nat., 2020

Identification of conserved evolutionary trajectories in tumors.

Ermin Hodzic, Raunak Shrestha, Salem Malikic, Colin C. Collins, Kevin Litchfield, Samra Turajlic, Süleyman Cenk Sahinalp

Bioinform., 2020

PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.

Erfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikic, Xuan Cindy Li, Osnat Bartok, Kevin Litchfield, Ronen Levy, Yardena Samuels, Alejandro A. Schäffer, E. Michael Gertz, Chi-Ping Day, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Glenn Merlino, Funda Ergün, Süleyman Cenk Sahinalp

Bioinform., 2020

2019

Collaborative intra-tumor heterogeneity detection.

Sahand Khakabimamaghani, Salem Malikic, Jeffrey Tang, Dujian Ding, Ryan D. Morin, Leonid Chindelevitch, Martin Ester

Bioinform., 2019

A multi-labeled tree dissimilarity measure for comparing "clonal trees" of tumor progression.

Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp

Algorithms Mol. Biol., 2019

2018

A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression.

Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp

Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018

Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data.

Salem Malikic, Katharina Jahn, Jack Kuipers, Süleyman Cenk Sahinalp, Niko Beerenwinkel

Proceedings of the Research in Computational Molecular Biology, 2018

2017

Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data.

Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, Süleyman Cenk Sahinalp

J. Comput. Biol., 2017

2015

Cypiripi: exact genotyping of <i>CYP2D6</i> using high-throughput sequencing data.

Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp

Bioinform., 2015

Clonality inference in multiple tumor samples using phylogeny.

Salem Malikic, Andrew W. McPherson, Nilgun Donmez, S. Cenk Sahinalp

Bioinform., 2015