Saâd Jbabdi

According to our database, Saâd Jbabdi authored at least 67 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Learning Label Refinement and Threshold Adjustment for Imbalanced Semi-Supervised Learning.

Zeju Li, Ying-Qiu Zheng, Chen Chen, Saâd Jbabdi

CoRR, 2024

2023

Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data.

István N. Huszár, Menuka Pallebage-Gamarallage, Sarah Bangerter-Christensen, Hannah Brooks, Sean P. Fitzgibbon, Sean Foxley, Marlies Hiemstra, Amy F. D. Howard, Saâd Jbabdi, Daniel Z. L. Kor, Anna Leonte, Jeroen Mollink, Adele Smart, Benjamin C. Tendler, Martin R. Turner, Olaf Ansorge, Karla L. Miller, Mark Jenkinson

NeuroImage, 2023

A Transfer Learning Approach to Localising a Deep Brain Stimulation Target.

Ying-Qiu Zheng, Harith Akram, Stephen M. Smith, Saâd Jbabdi

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

2022

Accurate predictions of individual differences in task-evoked brain activity from resting-state fMRI using a sparse ensemble learner.

Ying-Qiu Zheng, Seyedeh-Rezvan Farahibozorg, Weikang Gong, Hossein Rafipoor, Saâd Jbabdi, Stephen M. Smith

NeuroImage, 2022

Identifying microstructural changes in diffusion MRI; How to circumvent parameter degeneracy.

Hossein Rafipoor, Ying-Qiu Zheng, Ludovica Griffanti, Saâd Jbabdi, Michiel Cottaar

NeuroImage, 2022

An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons.

Daniel Z. L. Kor, Saâd Jbabdi, István N. Huszár, Jeroen Mollink, Benjamin C. Tendler, Sean Foxley, Chaoyue Wang, Connor Scott, Adele Smart, Olaf Ansorge, Menuka Pallebage-Gamarallage, Karla L. Miller, Amy F. D. Howard

NeuroImage, 2022

Estimating axial diffusivity in the NODDI model.

Amy F. D. Howard, Michiel Cottaar, Mark Drakesmith, Qiuyun Fan, Susie Yi Huang, Derek K. Jones, Frederik J. Lange, Jeroen Mollink, Suryanarayana Umesh Rudrapatna, Qiyuan Tian, Karla L. Miller, Saâd Jbabdi

NeuroImage, 2022

Constrained Self-supervised Method with Temporal Ensembling for Fiber Bundle Detection on Anatomic Tracing Data.

Vaanathi Sundaresan, Julia F. Lehman, Sean P. Fitzgibbon, Saâd Jbabdi, Suzanne N. Haber, Anastasia Yendiki

Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022

2021

Clinical applications of magnetic resonance imaging based functional and structural connectivity.

Chengyuan Wu, Francisca Ferreira, Michael D. Fox, Noam Harel, Jona A. Hattangadi-Gluth, Andreas Horn, Saâd Jbabdi, Joshua Kahan, Ashwini Oswal, Sameer A. Sheth, Yanmei Tie, Vejay Vakharia, Ludvic U. Zrinzo, Harith Akram

NeuroImage, 2021

Hierarchical modelling of functional brain networks in population and individuals from big fMRI data.

Seyedeh-Rezvan Farahibozorg, Janine D. Bijsterbosch, Weikang Gong, Saâd Jbabdi, Stephen M. Smith, Samuel J. Harrison, Mark W. Woolrich

NeuroImage, 2021

Modelling white matter in gyral blades as a continuous vector field.

Michiel Cottaar, Matteo Bastiani, Nikhil Boddu, Matthew F. Glasser, Suzanne N. Haber, David C. Van Essen, Stamatios N. Sotiropoulos, Saâd Jbabdi

NeuroImage, 2021

2020

XTRACT - Standardised protocols for automated tractography in the human and macaque brain.

Shaun Warrington, Katherine L. Bryant, Alexandre A. Khrapitchev, Jérôme Sallet, Marina Charquero-Ballester, Gwenaëlle Douaud, Saâd Jbabdi, Rogier B. Mars, Stamatios N. Sotiropoulos

NeuroImage, 2020

Non-negative data-driven mapping of structural connections with application to the neonatal brain.

Elinor Thompson, Ali Reza Mohammadi-Nejad, Emma C. Robinson, Jesper L. R. Andersson, Saâd Jbabdi, Matthew F. Glasser, Matteo Bastiani, Stamatios N. Sotiropoulos

NeuroImage, 2020

Use of multi-flip angle measurements to account for transmit inhomogeneity and non-Gaussian diffusion in DW-SSFP.

Benjamin C. Tendler, Sean Foxley, Moisés Hernández-Fernández, Michiel Cottaar, Connor Scott, Olaf Ansorge, Karla L. Miller, Saâd Jbabdi

NeuroImage, 2020

Improved fibre dispersion estimation using b-tensor encoding.

Michiel Cottaar, Filip Szczepankiewicz, Matteo Bastiani, Moisés Hernández-Fernández, Stamatios N. Sotiropoulos, Markus Nilsson, Saâd Jbabdi

NeuroImage, 2020

Transient spectral events in resting state MEG predict individual task responses.

Robert Becker, Diego Vidaurre, Andrew J. Quinn, Romesh G. Abeysuriya, Owen Parker Jones, Saâd Jbabdi, Mark W. Woolrich

NeuroImage, 2020

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing.

Joonas A. A. Autio, Matthew F. Glasser, Takayuki Ose, Chad J. Donahue, Matteo Bastiani, Masahiro Ohno, Yoshihiko Kawabata, Yuta Urushibata, Katsutoshi Murata, Kantaro Nishigori, Masataka Yamaguchi, Yuki Hori, Atsushi Yoshida, Yasuhiro Go, Timothy S. Coalson, Saâd Jbabdi, Stamatios N. Sotiropoulos, Henry Kennedy, Takuya Hayashi

NeuroImage, 2020

2019

Joint modelling of diffusion MRI and microscopy.

Amy F. D. Howard, Jeroen Mollink, Michiel Kleinnijenhuis, Menuka Pallebage-Gamarallage, Matteo Bastiani, Michiel Cottaar, Karla L. Miller, Saâd Jbabdi

NeuroImage, 2019

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes.

Moisés Hernández-Fernández, István Zoltan Reguly, Saâd Jbabdi, Michael B. Giles, Stephen M. Smith, Stamatios N. Sotiropoulos

NeuroImage, 2019

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction.

Matteo Bastiani, Michiel Cottaar, Sean P. Fitzgibbon, Sana Suri, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson

NeuroImage, 2019

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project.

Matteo Bastiani, Jesper L. R. Andersson, Lucilio Cordero-Grande, Maria Murgasova, Jana Hutter, Anthony N. Price, Antonios Makropoulos, Sean P. Fitzgibbon, Emer J. Hughes, Daniel Rueckert, Suresh Victor, Mary A. Rutherford, A. David Edwards, Stephen M. Smith, Jacques-Donald Tournier, Joseph V. Hajnal, Saâd Jbabdi, Stamatios N. Sotiropoulos

NeuroImage, 2019

2018

A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks.

Romesh G. Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Robert Becker, Benjamin A. E. Hunt, Matthew J. Brookes, Mark W. Woolrich

PLoS Comput. Biol., 2018

Concurrent white matter bundles and grey matter networks using independent component analysis.

Jonathan O'Muircheartaigh, Saâd Jbabdi

NeuroImage, 2018

Bayesian Optimisation of Large-Scale Biophysical Networks.

Jonathan Hadida, Stamatios N. Sotiropoulos, Romesh G. Abeysuriya, Mark W. Woolrich, Saâd Jbabdi

NeuroImage, 2018

Neuroimage special issue on brain segmentation and parcellation - Editorial.

R. Cameron Craddock, Pierre Bellec, Saâd Jbabdi

NeuroImage, 2018

A gyral coordinate system predictive of fibre orientations.

Michiel Cottaar, Matteo Bastiani, Charles Chen, Krikor Dikranian, David C. Van Essen, Timothy Edward John Behrens, Stamatios N. Sotiropoulos, Saâd Jbabdi

NeuroImage, 2018

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank.

Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith

NeuroImage, 2018

A Machine Learning Approach to Diffusion MRI Partial Volume Estimation.

Emmanuel Vallée, Wenchuan Wu, Francesca Galassi, Saâd Jbabdi, Stephen M. Smith

Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

2017

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging.

Jeroen Mollink, Michiel Kleinnijenhuis, Anne-Marie van Cappellen van Walsum, Stamatios N. Sotiropoulos, Michiel Cottaar, Christopher Mirfin, Mattias P. Heinrich, Mark Jenkinson, Menuka Pallebage-Gamarallage, Olaf Ansorge, Saâd Jbabdi, Karla L. Miller

NeuroImage, 2017

Improved tractography using asymmetric fibre orientation distributions.

Matteo Bastiani, Michiel Cottaar, Krikor Dikranian, Aurobrata Ghosh, Hui Zhang, Daniel C. Alexander, Tim E. J. Behrens, Saâd Jbabdi, Stamatios N. Sotiropoulos

NeuroImage, 2017

Subthalamic deep brain stimulation sweet spots and hyperdirect cortical connectivity in Parkinson's disease.

Harith Akram, Stamatios N. Sotiropoulos, Saâd Jbabdi, Dejan Georgiev, Philipp Mahlknecht, Jonathan Hyam, Thomas Foltynie, Patricia Limousin, Enrico De Vita, Marjan Jahanshahi, Marwan I. Hariz, John Ashburner, Tim E. J. Behrens, Ludvic U. Zrinzo

NeuroImage, 2017

2016

Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project.

Stamatios N. Sotiropoulos, Moisés Hernández-Fernández, An T. Vu, Jesper L. R. Andersson, Steen Moeller, Essa Yacoub, Christophe Lenglet, Kâmil Ugurbil, Timothy Edward John Behrens, Saâd Jbabdi

NeuroImage, 2016

A probabilistic atlas of the cerebellar white matter.

K. M. van Baarsen, Michiel Kleinnijenhuis, Saâd Jbabdi, Stamatios N. Sotiropoulos, J. A. Grotenhuis, Anne-Marie van Cappellen van Walsum

NeuroImage, 2016

2015

High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project.

An T. Vu, Edward J. Auerbach, Christophe Lenglet, Steen Moeller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Essa Yacoub, Kâmil Ugurbil

NeuroImage, 2015

Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data.

Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kâmil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart J. Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox

NeuroImage, 2015

2014

MSM: A new flexible framework for Multimodal Surface Matching.

Emma C. Robinson, Saâd Jbabdi, Matthew F. Glasser, Jesper L. R. Andersson, Gregory C. Burgess, Michael P. Harms, Stephen M. Smith, David C. Van Essen, Mark Jenkinson

NeuroImage, 2014

Improving diffusion-weighted imaging of post-mortem human brains: SSFP at 7 T.

Sean Foxley, Saâd Jbabdi, Stuart Clare, Wilfred Lam, Olaf Ansorge, Gwenaëlle Douaud, Karla L. Miller

NeuroImage, 2014

2013

RubiX: Combining Spatial Resolutions for Bayesian Inference of Crossing Fibers in Diffusion MRI.

Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Mark William Woolrich, Kâmil Ugurbil, Timothy Edward John Behrens

IEEE Trans. Medical Imaging, 2013

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

Kâmil Ugurbil, Junqian Xu, Edward J. Auerbach, Steen Moeller, An T. Vu, Julio Martin Duarte-Carvajalino, Christophe Lenglet, Xiaoping Wu, Sebastian Schmitter, Pierre-François van de Moortele, John P. Strupp, Guillermo Sapiro, Federico De Martino, Dingxin Wang, Noam Harel, Michael Garwood, Liyong Chen, David A. Feinberg, Stephen M. Smith, Karla L. Miller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Timothy Edward John Behrens, Matthew F. Glasser, David C. Van Essen, Essa Yacoub

NeuroImage, 2013

Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

Stamatios N. Sotiropoulos, Saâd Jbabdi, Junqian Xu, Jesper L. R. Andersson, Steen Moeller, Edward J. Auerbach, Matthew F. Glasser, Moisés Hernández, Guillermo Sapiro, Mark Jenkinson, David A. Feinberg, Essa Yacoub, Christophe Lenglet, David C. Van Essen, Kâmil Ugurbil, Timothy Edward John Behrens

NeuroImage, 2013

The minimal preprocessing pipelines for the Human Connectome Project.

Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson

NeuroImage, 2013

Spatially constrained hierarchical parcellation of the brain with resting-state fMRI.

Thomas Blumensath, Saâd Jbabdi, Matthew F. Glasser, David C. Van Essen, Kâmil Ugurbil, Timothy Edward John Behrens, Stephen M. Smith

NeuroImage, 2013

Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation.

Emma C. Robinson, Saâd Jbabdi, Jesper L. R. Andersson, Stephen M. Smith, Matthew F. Glasser, David C. Van Essen, Gregory C. Burgess, Michael P. Harms, Deanna M. Barch, Mark Jenkinson

Proceedings of the Information Processing in Medical Imaging, 2013

2012

Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI.

Stamatios N. Sotiropoulos, Timothy Edward John Behrens, Saâd Jbabdi

NeuroImage, 2012

Diffusion tractography of post-mortem human brains: Optimization and comparison of spin echo and steady-state free precession techniques.

Karla L. Miller, Jennifer A. McNab, Saâd Jbabdi, Gwenaëlle Douaud

NeuroImage, 2012

Modelling fibre fanning in diffusion-weighted MRI.

Stamatios N. Sotiropoulos, Timothy Edward John Behrens, Saâd Jbabdi

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011

Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner.

Karla L. Miller, Charlotte J. Stagg, Gwenaëlle Douaud, Saâd Jbabdi, Stephen M. Smith, Timothy Edward John Behrens, Mark Jenkinson, Steven A. Chance, Margaret M. Esiri, Natalie L. Voets, Ned Jenkinson, Tipu Z. Aziz, Martin R. Turner, Heidi Johansen-Berg, Jennifer A. McNab

NeuroImage, 2011

DTI measures in crossing-fibre areas: Increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease.

Gwenaëlle Douaud, Saâd Jbabdi, Timothy Edward John Behrens, Ricarda A. Menke, Achim Gass, Andreas U. Monsch, Anil Rao, Brandon J. Whitcher, Gordon L. Kindlmann, Paul M. Matthews, Stephen M. Smith

NeuroImage, 2011

Network analysis detects changes in the contralesional hemisphere following stroke.

Jonathan J. Crofts, Desmond J. Higham, Rose Bosnell, Saâd Jbabdi, Paul M. Matthews, T. E. J. Behrens, Heidi Johansen-Berg

NeuroImage, 2011

Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy.

Anastasia Yendiki, Patricia Panneck, Priti Srinivasan, Allison Stevens, Lilla Zöllei, Jean Augustinack, Ruopeng Wang, David H. Salat, Stefan Ehrlich, Tim E. J. Behrens, Saâd Jbabdi, Randy L. Gollub, Bruce Fischl

Frontiers Neuroinformatics, 2011

Tractography: Where Do We Go from Here?

Saâd Jbabdi, Heidi Johansen-Berg

Brain Connect., 2011

2010

Connectivity-based segmentation of the substantia nigra in human and its implications in Parkinson's disease.

Ricarda A. Menke, Saâd Jbabdi, Karla L. Miller, Paul M. Matthews, Mojtaba Zarei

NeuroImage, 2010

Crossing fibres in tract-based spatial statistics.

Saâd Jbabdi, Timothy Edward John Behrens, Stephen M. Smith

NeuroImage, 2010

2009

Bayesian analysis of neuroimaging data in FSL.

Mark William Woolrich, Saâd Jbabdi, Brian Patenaude, Michael A. Chappell, Salima Makni, Timothy Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith

NeuroImage, 2009

Determination of the human brainstem respiratory control network and its cortical connections in vivo using functional and structural imaging.

Kyle T. S. Pattinson, Georgios D. Mitsis, Ann K. Harvey, Saâd Jbabdi, Sharon Dirckx, Stephen D. Mayhew, Richard Rogers, Irene Tracey, Richard G. Wise

NeuroImage, 2009

MRI characteristics of the substantia nigra in Parkinson's disease: A combined quantitative T1 and DTI study.

Ricarda A. Menke, Jan Scholz, Karla L. Miller, Sean C. L. Deoni, Saâd Jbabdi, Paul M. Matthews, Mojtaba Zarei

NeuroImage, 2009

High resolution diffusion-weighted imaging in fixed human brain using diffusion-weighted steady state free precession.

Jennifer A. McNab, Saâd Jbabdi, Sean C. L. Deoni, Gwenaëlle Douaud, Timothy Edward John Behrens, Karla L. Miller

NeuroImage, 2009

Multiple-subjects connectivity-based parcellation using hierarchical Dirichlet process mixture models.

Saâd Jbabdi, Mark William Woolrich, Timothy Edward John Behrens

NeuroImage, 2009

In vivo evidence for the selective subcortical degeneration in Huntington's disease.

Gwenaëlle Douaud, Timothy Edward John Behrens, Cyril Poupon, Yann Cointepas, Saâd Jbabdi, Véronique Gaura, Narly Golestani, Pierre Krystkowiak, Christophe Verny, Philippe Damier, Anne-Catherine Bachoud-Lévi, Philippe Hantraye, Philippe Remy

NeuroImage, 2009

2008

Accurate Anisotropic Fast Marching for Diffusion-Based Geodesic Tractography.

Saâd Jbabdi, Pierre Bellec, Roberto Toro, Jean Daunizeau, Mélanie Pélégrini-Issac, Habib Benali

Int. J. Biomed. Imaging, 2008

2007

A Bayesian framework for global tractography.

Saâd Jbabdi, Mark W. Woolrich, Jesper L. R. Andersson, T. E. J. Behrens

NeuroImage, 2007

Symmetrical event-related EEG/fMRI information fusion in a variational Bayesian framework.

Jean Daunizeau, Christophe Grova, Guillaume Marrelec, Jérémie Mattout, Saâd Jbabdi, Mélanie Pélégrini-Issac, Jean-Marc Lina, Habib Benali

NeuroImage, 2007

Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

T. E. J. Behrens, Heidi Johansen-Berg, Saâd Jbabdi, Matthew F. S. Rushworth, Mark W. Woolrich

NeuroImage, 2007

2006

Identification of large-scale networks in the brain using fMRI.

Pierre Bellec, Vincent Perlbarg, Saâd Jbabdi, Mélanie Pélégrini-Issac, Jean-Luc Anton, Julien Doyon, Habib Benali

NeuroImage, 2006

2004

Selection of Spatially Independent Components to Explain Functional Connectivity In fMRI.

Vincent Perlbarg, Pierre Bellec, Habib Benali, Guillaume Marrelec, Saâd Jbabdi

Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

A Level Set Method for Building Anatomical Connectivity Paths Between Brain Areas Using DTI.

Saâd Jbabdi, Pierre Bellec, Guillaume Marrelec, Habib Benali

Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Identification of A Large-Scale Functional Network In Functional Magnetic Resonance Imaging.

Pierre Bellec, Guillaume Marrelec, Vincent Perlbarg, Saâd Jbabdi, Odile Jolivet, Mélanie Pélégrini-Issac, Habib Benali, Julien Doyon

Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004