Ryszard W. Adamiak

According to our database, Ryszard W. Adamiak authored at least 13 papers between 2000 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2018

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk

Nucleic Acids Res., 2018

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures.

Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk

BMC Bioinform., 2018

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk

Bioinform., 2018

2015

RNAssess - a web server for quality assessment of RNA 3D structures.

Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz

Nucleic Acids Res., 2015

New in silico approach to assessing RNA secondary structures with non-canonical base pairs.

Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

BMC Bioinform., 2015

2014

RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.

Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

Nucleic Acids Res., 2014

2010

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

Mariusz Popenda, Marta Szachniuk, Marek Blazewicz, Szymon Wasik, Edmund K. Burke, Jacek Blazewicz, Ryszard W. Adamiak

BMC Bioinform., 2010

2009

An assignment walk through 3D NMR spectrum.

Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz

Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2008

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.

Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak

Nucleic Acids Res., 2008

2005

NMR Analysis of RNA Bulged structures: Tabu Search Application in NOE Signal Assignment.

Marta Szachniuk, Lukasz Popenda, Zofia Gdaniec, Ryszard W. Adamiak, Jacek Blazewicz

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004

An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes.

Ryszard W. Adamiak, Jacek Blazewicz, Piotr Formanowicz, Zofia Gdaniec, Marta Kasprzak, Mariusz Popenda, Marta Szachniuk

J. Comput. Biol., 2004

General Conception of the Virtual Laboratory.

Marcin Lawenda, Norbert Meyer, Tomasz Rajtar, Marcin Okon, Dominik Stoklosa, Maciej Stroinski, Lukasz Popenda, Zofia Gdaniec, Ryszard W. Adamiak

Proceedings of the Computational Science, 2004

2000

Spatial Distribution Functions As a Tool in the Analysis of Ribonucleic Acids Hydration - Molecular Dynamics Studies.

Katarzyna Kulinska, Tadeusz Kulinski, Alexander Lyubartsev, Aatto Laaksonen, Ryszard W. Adamiak

Comput. Chem., 2000