Ryan H. Lilien
According to our database1,
Ryan H. Lilien
authored at least 23 papers
between 1996 and 2012.
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Bibliography
2012
Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA.
J. Chem. Inf. Model., 2012
2011
J. Chem. Inf. Model., 2011
Applying Medicinal Chemistry Transformations and Multiparameter Optimization to Guide the Search for High-Quality Leads and Candidates.
J. Chem. Inf. Model., 2011
2010
Restricted dead-end elimination: Protein redesign with a bounded number of residue mutations.
J. Comput. Chem., 2010
A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy.
Bioinform., 2010
2009
Predicting Multiple Ligand Binding Modes Using Self-Consistent Pharmacophore Hypotheses.
J. Chem. Inf. Model., 2009
Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation.
Bioinform., 2009
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding.
Bioinform., 2009
2008
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.
J. Comput. Chem., 2008
Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment.
Proceedings of the working conference on Advanced Visual Interfaces, 2008
2006
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles.
Proceedings of the Research in Computational Molecular Biology, 2006
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme.
J. Comput. Biol., 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
J. Comput. Chem., 2004
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
J. Comput. Biol., 2004
2003
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum.
J. Comput. Biol., 2003
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
2001
Proceedings of the 2001 IEEE International Conference on Robotics and Automation, 2001
1999
IEEE Trans. Pattern Anal. Mach. Intell., 1999
1996