Ryan H. Lilien

According to our database1, Ryan H. Lilien authored at least 23 papers between 1996 and 2012.

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Bibliography

2012
Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA.
J. Chem. Inf. Model., 2012

2011
Virtual Decoy Sets for Molecular Docking Benchmarks.
J. Chem. Inf. Model., 2011

Normalizing Molecular Docking Rankings using Virtually Generated Decoys.
J. Chem. Inf. Model., 2011

Applying Medicinal Chemistry Transformations and Multiparameter Optimization to Guide the Search for High-Quality Leads and Candidates.
J. Chem. Inf. Model., 2011

2010
Restricted dead-end elimination: Protein redesign with a bounded number of residue mutations.
J. Comput. Chem., 2010

A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy.
Bioinform., 2010

2009
Predicting Multiple Ligand Binding Modes Using Self-Consistent Pharmacophore Hypotheses.
J. Chem. Inf. Model., 2009

Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation.
Bioinform., 2009

The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding.
Bioinform., 2009

2008
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.
J. Comput. Chem., 2008

Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment.
Proceedings of the working conference on Advanced Visual Interfaces, 2008

2006
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles.
Proceedings of the Research in Computational Molecular Biology, 2006

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme.
J. Comput. Biol., 2005

High-throughput inference of protein-protein interfaces from unassigned NMR data.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004
Optimization and dynamics of protein-protein complexes using B-splines.
J. Comput. Chem., 2004

A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
J. Comput. Biol., 2004

2003
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum.
J. Comput. Biol., 2003

Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2001
Physical Geometric Algorithms for Structural Molecular Biology.
Proceedings of the 2001 IEEE International Conference on Robotics and Automation, 2001

1999
View-Based Recognition Using an Eigenspace Approximation to the Hausdorff Measure.
IEEE Trans. Pattern Anal. Mach. Intell., 1999

1996
Object Recognition Using Subspace Methods.
Proceedings of the Computer Vision, 1996


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