Ruopeng Xie

According to our database, Ruopeng Xie authored at least 7 papers between 2019 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria.

Jiawei Wang, Jiahui Li, Yi Hou, Wei Dai, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Tieli Zhou, Von Torres, Iain Hay, Christopher Stubenrauch, Yanju Zhang, Jiangning Song, Trevor Lithgow

Nucleic Acids Res., 2021

AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins.

Jiawei Wang, Wei Dai, Jiahui Li, Qi Li, Ruopeng Xie, Yanju Zhang, Christopher Stubenrauch, Trevor Lithgow

Nucleic Acids Res., 2021

DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy.

Ruopeng Xie, Jiahui Li, Jiawei Wang, Wei Dai, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Trevor Lithgow, Jiangning Song, Yanju Zhang

Briefings Bioinform., 2021

2020

PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins.

Jiawei Wang, Wei Dai, Jiahui Li, Ruopeng Xie, Rhys A. Dunstan, Christopher Stubenrauch, Yanju Zhang, Trevor Lithgow

Nucleic Acids Res., 2020

PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.

Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song

Bioinform., 2020

2019

Bastion3: a two-layer ensemble predictor of type III secreted effectors.

Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow

Bioinform., 2019

Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.

Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song

Briefings Bioinform., 2019