Ruibo Wu

Orcid: 0000-0002-1984-046X

According to our database1, Ruibo Wu authored at least 17 papers between 2008 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2023
QM/MM Modeling Aided Enzyme Engineering in Natural Products Biosynthesis.
J. Chem. Inf. Model., August, 2023

Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit.
Database J. Biol. Databases Curation, 2023

2022
Bio-inspired chemical space exploration of terpenoids.
Briefings Bioinform., 2022

2021
BioNavi-NP: Biosynthesis Navigator for Natural Products.
CoRR, 2021

2020
Residue-Orientation-Dependent Dynamics and Selectivity of Active Pocket in Microbe Class I Terpene Cyclases.
J. Chem. Inf. Model., 2020

TeroKit: A Database-Driven Web Server for Terpenome Research.
J. Chem. Inf. Model., 2020

GM-DockZn: a geometry matching-based docking algorithm for zinc proteins.
Bioinform., 2020

2019
Exploring Chemical and Biological Space of Terpenoids.
J. Chem. Inf. Model., 2019

2017
Intrinsic Dynamics of the Binding Rail and Its Allosteric Effect in the Class I Histone Deacetylases.
J. Chem. Inf. Model., September, 2017

2016
Molecular Dynamics Simulations Elucidate Conformational Dynamics Responsible for the Cyclization Reaction in TEAS.
J. Chem. Inf. Model., 2016

2015
Binding Kinetics versus Affinities in BRD4 Inhibition.
J. Chem. Inf. Model., 2015

Thiol versus hydroxamate as zinc binding group in HDAC inhibition: An <i>Ab initio</i> QM/MM molecular dynamics study.
J. Comput. Chem., 2015

2014
Structure-Function Analysis of the Conserved Tyrosine and Diverse π-Stacking among Class I Histone Deacetylases: A QM (DFT)/MM MD Study.
J. Chem. Inf. Model., 2014

2013
Molecular Dynamics-Based Virtual Screening: Accelerating the Drug Discovery Process by High-Performance Computing.
J. Chem. Inf. Model., 2013

2009
Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase.
J. Comput. Chem., 2009

2008
Effects of electron attachment on C<sub>5'</sub>-O<sub>5'</sub> and C<sub>1'</sub>-N<sub>1</sub> bond cleavages of pyrimidine nucleotides: A theoretical study.
J. Comput. Chem., 2008

QM/MM study of catalytic methyl transfer by the <i>N</i><sup>5</sup>-glutamine SAM-dependent methyltransferase and its inhibition by the nitrogen analogue of coenzyme.
J. Comput. Chem., 2008


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