Rui Oliveira

According to our database, Rui Oliveira authored at least 17 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2023

SBML2HYB: a Python interface for SBML compatible hybrid modeling.

José Pinto, Rafael S. Costa, Leonardo Alexandre, João Ramos, Rui Oliveira

Bioinform., January, 2023

2022

A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks.

José Pinto, Mykaella Mestre, J. Ramos, Rafael S. Costa, Gerald Striedner, Rui Oliveira

Comput. Chem. Eng., 2022

2016

A principal components method constrained by elementary flux modes: analysis of flux data sets.

Moritz von Stosch, Cristiana Rodrigues de Azevedo, Mauro Luis, Sebastião Feyo de Azevedo, Rui Oliveira

BMC Bioinform., 2016

2015

Iterative learning control of polyhydroxybutyrate production in a sequencing batch reactor.

Seyong Jung, Jie Zhang, Rui Oliveira

Proceedings of the 20th International Conference on Methods and Models in Automation and Robotics, 2015

2014

Hybrid semi-parametric modeling in process systems engineering: Past, present and future.

Moritz von Stosch, Rui Oliveira, Joana Peres, Sebastião Feyo de Azevedo

Comput. Chem. Eng., 2014

Hybrid Modeling for Systems Biology: Theory and Practice.

Moritz von Stosch, Nuno Carinhas, Rui Oliveira

Proceedings of the Large-Scale Networks in Engineering and Life Sciences, 2014

2012

On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP.

António Roldão, Maria Candida M. Mellado, J. C. Lima, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira

PLoS Comput. Biol., 2012

2011

A novel identification method for hybrid (N)PLS dynamical systems with application to bioprocesses.

Moritz von Stosch, Rui Oliveira, Joana Peres, Sebastião Feyo de Azevedo

Expert Syst. Appl., 2011

Cell functional enviromics: Unravelling the function of environmental factors.

Ana P. Teixeira, João M. L. Dias, Nuno Carinhas, Marcos Sousa, José Clemente, António Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, Rui Oliveira

BMC Syst. Biol., 2011

Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination.

Ana R. Ferreira, João M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Inês A. Isidro, Moritz von Stosch, Rui Oliveira

BMC Syst. Biol., 2011

Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products.

Nuno Carinhas, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira

BMC Syst. Biol., 2011

2010

Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach.

Moritz von Stosch, Joana Peres, Sebastião Feyo de Azevedo, Rui Oliveira

BMC Syst. Biol., 2010

2008

Stochastic simulation of protein expression in the baculovirus/insect cells system.

António Roldão, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira

Comput. Chem. Eng., 2008

Metabolic modelling of polyhydroxyalkanoate copolymers production by mixed microbial cultures.

João M. L. Dias, Adrian Oehmen, Luísa S. Serafim, Paulo C. Lemos, Maria A. M. Reis, Rui Oliveira

BMC Syst. Biol., 2008

2007

Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control.

Ana P. Teixeira, Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, Rui Oliveira

BMC Bioinform., 2007

2005

Hybrid Metabolic Flux Analysis/Artificial Neural Network Modeling of Bioprocesses.

Ana P. Teixeira, Paula M. Alves, Rui Oliveira, Carlos Alves, Manuel J. T. Carrondo

Proceedings of the 5th International Conference on Hybrid Intelligent Systems (HIS 2005), 2005

2004

Combining first principles modelling and artificial neural networks: a general framework.

Rui Oliveira

Comput. Chem. Eng., 2004