Ross C. Walker

According to our database1, Ross C. Walker authored at least 21 papers between 2006 and 2022.

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Bibliography

2022
RNA folding using quantum computers.
PLoS Comput. Biol., 2022

2018
GPU-Accelerated Molecular Dynamics and Free Energy Methods in Amber18: Performance Enhancements and New Features.
J. Chem. Inf. Model., 2018

Fast and flexible gpu accelerated binding free energy calculations within the amber molecular dynamics package.
J. Comput. Chem., 2018

2017
Combined quantum-mechanical molecular mechanics calculations with NWChem and AMBER: Excited state properties of green fluorescent protein chromophore analogue in aqueous solution.
J. Comput. Chem., 2017

2016
Solvation thermodynamic mapping of molecular surfaces in AmberTools: GIST.
J. Comput. Chem., 2016

Extension of the AMBER molecular dynamics software to Intel's Many Integrated Core (MIC) architecture.
Comput. Phys. Commun., 2016

2015
The adaptive buffered force QM/MM method in the CP2K and AMBER software packages.
J. Comput. Chem., 2015

Paramfit: Automated optimization of force field parameters for molecular dynamics simulations.
J. Comput. Chem., 2015

2014
An extensible interface for QM/MM molecular dynamics simulations with AMBER.
J. Comput. Chem., 2014

Streamlining Development of a Multimillion-Line Computational Chemistry Code.
Comput. Sci. Eng., 2014

An investigation of the effects of hard and soft errors on graphics processing unit-accelerated molecular dynamics simulations.
Concurr. Comput. Pract. Exp., 2014

2013
Distal Loop Flexibility of a Regulatory Domain Modulates Dynamics and Activity of C-Terminal Src Kinase (Csk).
PLoS Comput. Biol., 2013

SPFP: Speed without compromise - A mixed precision model for GPU accelerated molecular dynamics simulations.
Comput. Phys. Commun., 2013

An investigation of the effects of error correcting code on GPU-accelerated molecular dynamics simulations.
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

Implementing continuous integration software in an established computational chemistry software package.
Proceedings of the 5th International Workshop on Software Engineering for Computational Science and Engineering, 2013

2012
Transforming molecular biology research through extreme acceleration of AMBER molecular dynamics simulations: sampling for the 99%.
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment, 2012

2009
Assessment of standard force field models against high-quality <i>ab initio</i> potential curves for prototypes of pi-pi, CH/pi, and SH/pi interactions.
J. Comput. Chem., 2009

2008
The implementation of a fast and accurate QM/MM potential method in Amber.
J. Comput. Chem., 2008

Advances in Rosetta protein structure prediction on massively parallel systems.
IBM J. Res. Dev., 2008

2007
Comparison of basis set effects and the performance of <i>ab initio</i> and DFT methods for probing equilibrium fluctuations.
J. Comput. Chem., 2007

2006
Poster reception - High resolution, high throughput protein structure prediction using IBM Blue Gene supercomputers: predicting CASP targets in record time.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006


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