Rosalba Giugno

Orcid: 0000-0001-9843-7638

According to our database1, Rosalba Giugno authored at least 92 papers between 1999 and 2024.

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Bibliography

2024
ArcMatch: high-performance subgraph matching for labeled graphs by exploiting edge domains.
Data Min. Knowl. Discov., November, 2024

Identifying the joint signature of brain atrophy and gene variant scores in Alzheimer's Disease.
J. Biomed. Informatics, January, 2024

From translational bioinformatics computational methodologies to personalized medicine.
J. Biomed. Informatics, 2024

DiGAS: Differential gene allele spectrum as a descriptor in genetic studies.
Comput. Biol. Medicine, 2024

GPU-Accelerated BFS for Dynamic Networks.
Proceedings of the Euro-Par 2024: Parallel Processing, 2024

Motif Finding Algorithms: A Performance Comparison.
Proceedings of the From Computational Logic to Computational Biology, 2024

2023
PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies.
J. Biomed. Informatics, December, 2023

A survey on algorithms to characterize transcription factor binding sites.
Briefings Bioinform., May, 2023

APDB: a database on air pollutant characterization and similarity prediction.
Database J. Biol. Databases Curation, 2023

FAST-CON: a Multi-source Approach for Efficient S- T Connectivity on Sparse Graphs.
Proceedings of the IEEE High Performance Extreme Computing Conference, 2023

MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems.
Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, 2023

2022
Ten quick tips for biomarker discovery and validation analyses using machine learning.
PLoS Comput. Biol., 2022

2021
SystemC Implementation of Stochastic Petri Nets for Simulation and Parameterization of Biological Networks.
ACM Trans. Embed. Comput. Syst., 2021

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
PLoS Comput. Biol., 2021

GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases.
BMC Bioinform., 2021

Challenges in gene-oriented approaches for pangenome content discovery.
Briefings Bioinform., 2021

TEDAR: Temporal dynamic signal detection of adverse reactions.
Artif. Intell. Medicine, 2021

Mining genetic, transcriptomic and imaging data in Parkinson's disease.
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

An Entropy Heuristic to Optimize Decision Diagrams for Index-driven Search in Biological Graph Databases.
Proceedings of the CIKM 2021 Workshops co-located with 30th ACM International Conference on Information and Knowledge Management (CIKM 2021), 2021

MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems.
Proceedings of the CIKM '21: The 30th ACM International Conference on Information and Knowledge Management, Virtual Event, Queensland, Australia, November 1, 2021

2020
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks.
F1000Research, 2020

MultiRI: Fast Subgraph Matching in Labeled Multigraphs.
CoRR, 2020

CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing.
Bioinform., 2020

2019
Fast methods for finding significant motifs on labelled multi-relational networks.
J. Complex Networks, 2019

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes.
BMC Bioinform., 2019

Parallel Searching on Biological Networks.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

A Reliable Method to Remove Batch Effects Maintaining Group Differences in Lymphoma Methylation Case Study.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

Efficient Simulation and Parametrization of Stochastic Petri Nets in SystemC: A Case study from Systems Biology.
Proceedings of the 2019 Forum for Specification and Design Languages, 2019

Automatic Parameterization of the Purine Metabolism Pathway through Discrete Event-based Simulation.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

On the Simulation and Automatic Parametrization of Metabolic Networks Through Electronic Design Automation.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018
miRandola 2017: a curated knowledge base of non-invasive biomarkers.
Nucleic Acids Res., 2018

<i>Ex Machina</i>: Analytical platforms, Law and the Challenges of Computational Legal Science.
Future Internet, 2018

Fast analytical methods for finding significant labeled graph motifs.
Data Min. Knowl. Discov., 2018

INBIA: a boosting methodology for proteomic network inference.
BMC Bioinform., 2018

Arena-Idb: a platform to build human non-coding RNA interaction networks.
BMC Bioinform., 2018

Correction to: cuRnet: an R package for graph traversing on GPU.
BMC Bioinform., 2018

cuRnet: an R package for graph traversing on GPU.
BMC Bioinform., 2018

Simple Pattern-only Heuristics Lead to Fast Subgraph Matching Strategies on Very Large Networks.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2018

Centrality Speeds the Subgraph Isomorphism Search Up in Target Aware Contexts.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

An Efficient Implementation of a Subgraph Isomorphism Algorithm for GPUs.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

gLabTrie: A Data Structure for Motif Discovery with Constraints.
Proceedings of the Graph Data Management, Fundamental Issues and Recent Developments., 2018

2017
On the Variable Ordering in Subgraph Isomorphism Algorithms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

A novel computational method for inferring competing endogenous interactions.
Briefings Bioinform., 2017

2016
APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks.
Bioinform., 2016

A SystemC-based platform for assertion-based verification and mutation analysis in systems biology.
Proceedings of the 17th Latin-American Test Symposium, 2016

SyQUAL: a platform for qualitative modelling and simulation of biological systems.
Proceedings of the IEEE International High Level Design Validation and Test Workshop, 2016

2015
NetMatchStar: an enhanced Cytoscape network querying app.
F1000Research, 2015

Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification.
CoRR, 2015

A knowledge base for Vitis vinifera functional analysis.
BMC Syst. Biol., 2015

DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.
BMC Syst. Biol., 2015

OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder.
Database J. Biol. Databases Curation, 2015

A SystemC Platform for Signal Transduction Modelling and Simulation in Systems Biology.
Proceedings of the 25th edition on Great Lakes Symposium on VLSI, GLVLSI 2015, Pittsburgh, PA, USA, May 20, 2015

2014
GASOLINE: a Cytoscape app for multiple local alignment of PPI networks.
F1000Research, 2014

Dynamic Modeling and Simulation of Leukocyte Integrin Activation through an Electronic Design Automation Framework.
Proceedings of the Computational Methods in Systems Biology, 2014

2013
Enhancing density-based clustering: Parameter reduction and outlier detection.
Inf. Syst., 2013

Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2013

VIRGO: visualization of A-to-I RNA editing sites in genomic sequences.
BMC Bioinform., 2013

A subgraph isomorphism algorithm and its application to biochemical data.
BMC Bioinform., 2013

Drug-target interaction prediction through domain-tuned network-based inference.
Bioinform., 2013

2012
miR-EdiTar: a database of predicted A-to-I edited miRNA target sites.
Bioinform., 2012

2011
Tools and collaborative environments for bioinformatics research.
Briefings Bioinform., 2011

Editorial.
Briefings Bioinform., 2011

Obstacles constrained group mobility models in event-driven wireless networks with movable base stations.
Ad Hoc Networks, 2011

DBStrata: a system for density-based clustering and outlier detection based on stratification.
Proceedings of the Fourth International Conference on Similarity Search and Applications, 2011

Behind Efficient Algorithms to Search in Graphs.
Proceedings of the Graph Data Management: Techniques and Applications., 2011

2010
Sigma: a Set-Cover-Based Inexact Graph Matching Algorithm.
J. Bioinform. Comput. Biol., 2010

SING: Subgraph search In Non-homogeneous Graphs.
BMC Bioinform., 2010

Enhancing Graph Database Indexing by Suffix Tree Structure.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

MySQL Data Mining: Extending MySQL to Support Data Mining Primitives (Demo).
Proceedings of the Knowledge-Based and Intelligent Information and Engineering Systems, 2010

An Efficient Duplicate Record Detection Using q-Grams Array Inverted Index.
Proceedings of the Data Warehousing and Knowledge Discovery, 12th International Conference, 2010

Business Process Model Retrieval Based on Graph Indexing Method.
Proceedings of the Business Process Management Workshops, 2010

2009
miRò: a miRNA knowledge base.
Database J. Biol. Databases Curation, 2009

Distributed randomized algorithms for low-support data mining.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

BitCube: A Bottom-Up Cubing Engineering.
Proceedings of the Data Warehousing and Knowledge Discovery, 11th International Conference, 2009

2008
GraphFind: enhancing graph searching by low support data mining techniques.
BMC Bioinform., 2008

2007
Sequence similarity is more relevant than species specificity in probabilistic backtranslation.
BMC Bioinform., 2007

NetMatch: a Cytoscape plugin for searching biological networks.
Bioinform., 2007

2006
Distributed antipole clustering for efficient data search and management in Euclidean and metric spaces.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

2005
Multiple-Winners Randomized Tournaments with Consensus for Optimization Problems in Generic Metric Spaces.
Proceedings of the Experimental and Efficient Algorithms, 4th InternationalWorkshop, 2005

Clustered Trie Structures for Approximate Search in Hierarchical Objects Collections.
Proceedings of the Pattern Recognition and Data Mining, 2005

2004
Locally sensitive backtranslation based on multiple sequence alignment.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

2003
Searching algorithms and data structures for combinatorial, temporal and probabilistic databases.
PhD thesis, 2003

Temporal Probabilistic Object Bases.
IEEE Trans. Knowl. Data Eng., 2003

Efficient Boundary Values Generation in General Metric Spaces for Software Component Testing.
Proceedings of the Verification: Theory and Practice, 2003

2002
Algorithmics and Applications of Tree and Graph Searching.
Proceedings of the Twenty-first ACM SIGACT-SIGMOD-SIGART Symposium on Principles of Database Systems, 2002

P-SHOQ(D): A Probabilistic Extension of SHOQ(D) for Probabilistic Ontologies in the Semantic Web.
Proceedings of the Logics in Artificial Intelligence, European Conference, 2002

GraphGrep: A Fast and Universal Method for Querying Graphs.
Proceedings of the 16th International Conference on Pattern Recognition, 2002

2001
Best-Match Retrieval for Structured Images.
IEEE Trans. Pattern Anal. Mach. Intell., 2001

2000
Approximate search in image database.
Proceedings of the Storage and Retrieval for Media Databases 2000, 2000

1999
Error-Tolerant Database for Structured Images.
Proceedings of the Visual Information and Information Systems, 1999

Looking for the Lost Follis.
Proceedings of the 20th Annual Conference of the European Association for Computer Graphics, 1999


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