Roman G. Efremov

According to our database, Roman G. Efremov authored at least 13 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2024

Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen.

Vadim K. Karnaukhov, Dmitrii S. Shcherbinin, Anton O. Chugunov, Dmitriy M. Chudakov, Roman G. Efremov, Ivan V. Zvyagin, Mikhail Shugay

Nat. Comput. Sci., July, 2024

2021

Stepwise Insertion of Cobra Cardiotoxin CT2 into a Lipid Bilayer Occurs as an Interplay of Protein and Membrane "Dynamic Molecular Portraits".

Anastasia G. Konshina, Peter V. Dubovskii, Roman G. Efremov

J. Chem. Inf. Model., 2021

2019

Dielectric-Dependent Strength of Interlipid Hydrogen Bonding in Biomembranes: Model Case Study.

Roman G. Efremov

J. Chem. Inf. Model., 2019

2017

Cardiotoxins: Functional Role of Local Conformational Changes.

Anastasia G. Konshina, Nikolay A. Krylov, Roman G. Efremov

J. Chem. Inf. Model., November, 2017

2014

Deciphering Fine Molecular Details of Proteins' Structure and Function with a <i>Protein Surface Topography (PST)</i> Method.

Anna D. Koromyslova, Anton O. Chugunov, Roman G. Efremov

J. Chem. Inf. Model., 2014

PREDDIMER: a web server for prediction of transmembrane helical dimers.

Anton A. Polyansky, Anton O. Chugunov, Pavel E. Volynsky, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov

Bioinform., 2014

2009

PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.

Timothy V. Pyrkov, Anton O. Chugunov, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov

Bioinform., 2009

2007

Docking of ATP to Ca-ATPase: Considering Protein Domain Motions.

Timothy V. Pyrkov, Yuri A. Kosinsky, Alexander S. Arseniev, John P. Priestle, Edgar Jacoby, Roman G. Efremov

J. Chem. Inf. Model., 2007

Method To Assess Packing Quality of Transmembrane α-Helices in Proteins, 2. Validation by "Correct vs Misleading" Test.

Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov

J. Chem. Inf. Model., 2007

Method To Assess Packing Quality of Transmembrane α-Helices in Proteins, 1. Parametrization Using Structural Data.

Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov

J. Chem. Inf. Model., 2007

Computer Simulations of Membrane-Lytic peptides: Perspectives in Drug Design.

Anton A. Polyansky, Pavel E. Volynsky, Roman G. Efremov

J. Bioinform. Comput. Biol., 2007

2006

Association of transmembrane helices: what determines assembling of a dimer?

Roman G. Efremov, Yana A. Vereshaga, Pavel E. Volynsky, Dmitry E. Nolde, Alexander S. Arseniev

J. Comput. Aided Mol. Des., 2006

2004

Development of the force field parameters for phosphoimidazole and phosphohistidine.

Yuri A. Kosinsky, Pavel E. Volynsky, Philippe Lagant, Gérard Vergoten, Ei-Ichiro Suzuki, Alexander S. Arseniev, Roman G. Efremov

J. Comput. Chem., 2004