Roland Eils
Orcid: 0000-0002-0034-4036
According to our database1,
Roland Eils
authored at least 127 papers
between 1996 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
On csauthors.net:
Bibliography
2023
Eos and OMOCL: Towards a seamless integration of openEHR records into the OMOP Common Data Model.
J. Biomed. Informatics, August, 2023
SN Comput. Sci., July, 2023
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023
2022
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
2021
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Briefings Bioinform., 2021
Knowledge bases and software support for variant interpretation in precision oncology.
Briefings Bioinform., 2021
Proceedings of the ICT for Health, Accessibility and Wellbeing, 2021
2020
Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders.
Nat. Mach. Intell., 2020
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020
Proceedings of the IEEE European Symposium on Security and Privacy, 2020
2019
Publisher Correction: Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins.
Nat. Mach. Intell., 2019
Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins.
Nat. Mach. Intell., 2019
2018
Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution.
NeuroImage, 2018
Nucleic Acids Res., 2018
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
Proceedings of the 2018 IEEE European Symposium on Security and Privacy, 2018
2017
PLoS Comput. Biol., 2017
Proceedings of the 2017 IEEE Symposium on Security and Privacy, 2017
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017
2016
Nat., 2016
BMC Bioinform., 2016
Bioinform., 2016
HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
Bioinform., 2016
Briefings Bioinform., 2016
2015
Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association.
IEEE Trans. Image Process., 2015
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.
Nucleic Acids Res., 2015
Non-rigid multi-frame registration of cell nuclei in live cell fluorescence microscopy image data.
Medical Image Anal., 2015
On the role of spatial phase and phase correlation in vision, illusion, and cognition.
Frontiers Comput. Neurosci., 2015
2014
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.
PLoS Comput. Biol., 2014
PLoS Comput. Biol., 2014
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling.
BMC Syst. Biol., 2014
Estimating the activity of transcription factors by the effect on their target genes.
Bioinform., 2014
Bioinform., 2014
2013
Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities.
Bioinform., 2013
Bioinform., 2013
2012
Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach.
IEEE Trans. Medical Imaging, 2012
Tracking virus particles in fluorescence microscopy images using two-step multi-frame association.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012
Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens.
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012
2011
Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion.
IEEE Trans. Image Process., 2011
Normalizing for individual cell population context in the analysis of high-content cellular screens.
BMC Bioinform., 2011
RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factors.
Bioinform., 2011
Quantification of frap experiments in live cell image sequences by combining segmentation and registration.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Tracking multiple particles in fluorescence microscopy images via probabilistic data association.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Proceedings of the 14th International Conference on Information Fusion, 2011
Proceedings of the Twenty-Fifth AAAI Conference on Artificial Intelligence, 2011
2010
Identifying essential genes in bacterial metabolic networks with machine learning methods.
BMC Syst. Biol., 2010
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information.
BMC Bioinform., 2010
Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.
Bioinform., 2010
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways.
Bioinform., 2010
Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes.
Proceedings of the Bildverarbeitung für die Medizin 2010 - Algorithmen - Systeme, 2010
2009
PLoS Comput. Biol., 2009
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences.
Medical Image Anal., 2009
Prediction of small molecule binding property of protein domains with Bayesian classifiers based on Markov chains.
Comput. Biol. Chem., 2009
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens.
Bioinform., 2009
Detection of non-uniform multi-body motion in image time-series using saccades-enhanced phase correlation.
Proceedings of the Medical Imaging 2009: Image Processing, 2009
Analyzing the regulation of metabolic pathways in human breast cancer.
Proceedings of the LWA 2009: Workshop-Woche: Lernen, 2009
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009
2008
IEEE Trans. Image Process., 2008
BMC Syst. Biol., 2008
Machine learning based analyses on metabolic networks supports high-throughput knockout screens.
BMC Syst. Biol., 2008
Systems Biology and Artificial Life: Towards Predictive Modeling of Biological Systems.
Artif. Life, 2008
Nonlinear elastic model for image registration and soft tissue simulation based on piecewise St. Venant-Kirchhoff material approximation.
Proceedings of the Medical Imaging 2008: Image Processing, 2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008
Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008
2007
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of <i>Escherichia coli</i>.
BMC Bioinform., 2007
Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images.
Proceedings of the Medical Imaging 2007: Image Processing, 2007
Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences.
Proceedings of the Medical Imaging 2007: Image Processing, 2007
Motion detection and pattern tracking in microscopical images using phase correlation approach.
Proceedings of the Medical Imaging 2007: Image Processing, 2007
Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory.
Proceedings of the Advances in Mass Data Analysis of Signals and Images in Medicine, 2007
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli.
Proceedings of the LWA 2007: Lernen - Wissen, 2007
Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory.
Proceedings of the Pattern Recognition, 2007
Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei.
Proceedings of the Bioinformatics Research and Development, First International Conference, 2007
Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells.
Proceedings of the Bildverarbeitung für die Medizin 2007, 2007
Proceedings of the Bildverarbeitung für die Medizin 2007, 2007
2006
Nucleic Acids Res., 2006
Computational Systems Biology Platforms (Computergestützte Systembiologieplattformen).
it Inf. Technol., 2006
Systems Biology and Information Technology (Systembiologie und Informationstechnologie.
it Inf. Technol., 2006
Discovering functional gene expression patterns in the metabolic network of <i>Escherichia coli </i>with wavelets transforms.
BMC Bioinform., 2006
Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains.
BMC Bioinform., 2006
Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images.
Bioinform., 2006
Group testing for pathway analysis improves comparability of different microarray datasets.
Bioinform., 2006
Topological analysis of 3D cell nuclei using finite element template-based spherical mapping.
Proceedings of the Medical Imaging 2006: Image Processing, 2006
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006
Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms.
Proceedings of the LWA 2006: Lernen - Wissensentdeckung - Adaptivität, Hildesheim, Deutschland, October 9th-11th 2006, joint workshop event of several interest groups of the German Society for Informatics (GI) - 14th Workshop on Adaptivity and User Modeling in Interactive Systems (ABIS 2006) - Workshop Information Retrieval 2006 of the Special Interest Group Information Retrieval (FGIR 2006) - Workshop on Knowledge and Experience Management (FGWM 2006), 2006
Analyzing motion and deformation of the cell nucleus for studying co-localizations of nuclear structures.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Automated recognition of mitotic patterns in fluorescence microscopy images of human cells.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006
Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006
Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006
2005
Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.
BMC Bioinform., 2005
2004
BMC Bioinform., 2004
Bioinform., 2004
Assessing The Similarity of Spatial Configurations Using Distance Differences and Bending Energy: Application To Chromosomal Interphase Arrangements In HeLa Cell Clones.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Proceedings of the Computational Methods in Systems Biology, International Conference, 2004
General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2004
2003
Understanding the classification of tumors with a support-vector-machine: A case-based explanation scheme.
Proceedings of the German Conference on Bioinformatics, 2003
Gene expression analysis on biochemical networks with the potts spin model.
Proceedings of the German Conference on Bioinformatics, 2003
2002
Shape-adapted motion model based on thin-plate splines and point clustering for point set registration.
Proceedings of the Medical Imaging 2002: Image Processing, 2002
Proceedings of the 32. Jahrestagung der Gesellschaft für Informatik, Informatik bewegt, INFORMATIK 2002, Dortmund, Germany, September 30, 2002
Modelling of Information Flows in Cells.
Proceedings of the 16<sup>th</sup> European Simulation Multiconference: Modelling and Simulation 2002, 2002
2001
New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001
An Active Contour Model for Segmentation Based on Cubic B-splines and Gradient Vector Flow.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001
A Point Set Registration Algorithm Using a Motion Model Based on Thin-Plate Splines and Point Clustering.
Proceedings of the Pattern Recognition, 2001
1996
Proceedings of the Mustererkennung 1996, 1996
Modellgestützte Segmentierung von Replikationsdomänen in dreidimensionalen konfokalen Mikroskopiebildern.
Proceedings of the Mustererkennung 1996, 1996