Rohit Singh

According to our database, Rohit Singh authored at least 19 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.

Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger

Bioinform., October, 2023

Causally-guided Regularization of Graph Attention Improves Generalizability.

Alexander P. Wu, Thomas Markovich, Bonnie Berger, Nils Yannick Hammerla, Rohit Singh

Trans. Mach. Learn. Res., 2023

2022

Granger causal inference on DAGs identifies genomic loci regulating transcription.

Alexander P. Wu, Rohit Singh, Bonnie Berger

Proceedings of the Tenth International Conference on Learning Representations, 2022

2012

Algorithms for the analysis of protein interaction networks.

Rohit Singh

PhD thesis, 2012

2011

IsoBase: a database of functionally related proteins across PPI networks.

Daniel Park, Rohit Singh, Michael Baym, Chung-Shou Liao, Bonnie Berger

Nucleic Acids Res., 2011

Sparse estimation for structural variability.

Raghavendra Hosur, Rohit Singh, Bonnie Berger

Algorithms Mol. Biol., 2011

2010

Struct2Net: a web service to predict protein-protein interactions using a structure-based approach.

Rohit Singh, Daniel Park, Jinbo Xu, Raghavendra Hosur, Bonnie Berger

Nucleic Acids Res., 2010

2009

IsoRankN: spectral methods for global alignment of multiple protein networks.

Chung-Shou Liao, Kanghao Lu, Michael Baym, Rohit Singh, Bonnie Berger

Bioinform., 2009

2008

Global alignment of multiple protein interaction networks with application to functional orthology detection.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proc. Natl. Acad. Sci. USA, 2008

Graph algorithms for biological systems analysis.

Bonnie Berger, Rohit Singh, Jinbo Xu

Proceedings of the Nineteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2008

Global Alignment of Multiple Protein Interaction Networks.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proceedings of the Biocomputing 2008, 2008

2007

Predicting and Annotating Catalytic Residues: An Information Theoretic Approach.

Beckett W. Sterner, Rohit Singh, Bonnie Berger

J. Comput. Biol., 2007

Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proceedings of the Research in Computational Molecular Biology, 2007

Probabilistic Modeling of Systematic Errors in Two-Hybrid Experiments.

David A. Sontag, Rohit Singh, Bonnie Berger

Proceedings of the Biocomputing 2007, 2007

2006

Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction.

Rohit Singh, Jinbo Xu, Bonnie Berger

Proceedings of the Biocomputing 2006, 2006

2005

ChainTweak: Sampling from the Neighbourhood of a Protein Conformation.

Rohit Singh, Bonnie Berger

Proceedings of the Biocomputing 2005, 2005

Active learning for sampling in time-series experiments with application to gene expression analysis.

Rohit Singh, Nathan P. Palmer, David K. Gifford, Bonnie Berger, Ziv Bar-Joseph

Proceedings of the Machine Learning, 2005

2003

Identifying Structural Motifs in Proteins.

Rohit Singh, Mitul Saha

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

1999

Multi-Dimensional Interval Algebra with Symmetry for Describing Block Layouts.

Ankur Lahoti, Rohit Singh, Amitabha Mukerjee

Proceedings of the Graphics Recognition, Recent Advances, Third International Workshop, 1999