Roeland C. H. J. van Ham

According to our database, Roeland C. H. J. van Ham authored at least 16 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

A Comparison of Global Sensitivity Analysis Methods for Explainable AI With an Application in Genomic Prediction.

Bas van Stein, Elena Raponi, Zahra Sadeghi, Niek Bouman, Roeland C. H. J. van Ham, Thomas Bäck

IEEE Access, 2022

2021

Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function.

Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel M. Gomez, Victoria E. Sánchez, Marcel J. T. Reinders

Bioinform., 2021

2020

Metric learning on expression data for gene function prediction.

Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham

Bioinform., 2020

2019

Improving protein function prediction using protein sequence and GO-term similarities.

Stavros Makrodimitris, Roeland C. H. J. van Ham, Marcel J. T. Reinders

Bioinform., 2019

2011

SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks.

Peter Boyen, Dries Van Dyck, Frank Neven, Roeland C. H. J. van Ham, Aalt D. J. van Dijk

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments.

Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk

Nucleic Acids Res., 2011

Correlated mutations via regularized multinomial regression.

Janrdanan Sreekumar, Cajo J. F. ter Braak, Roeland C. H. J. van Ham, Aalt D. J. van Dijk

BMC Bioinform., 2011

2010

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction.

Aalt D. J. van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink

PLoS Comput. Biol., 2010

Continuous-time modeling of cell fate determination in Arabidopsis flowers.

Simon van Mourik, Aalt D. J. van Dijk, Maarten de Gee, Richard G. H. Immink, Kerstin Kaufmann, Gerco C. Angenent, Roeland C. H. J. van Ham, Jaap Molenaar

BMC Syst. Biol., 2010

2009

Automated procedure for candidate compound selection in GC-MS metabolomics based on prediction of Kovats retention index.

V. V. Mihaleva, H. A. Verhoeven, R. C. H. de Vos, R. D. Hall, Roeland C. H. J. van Ham

Bioinform., 2009

SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks.

Peter Boyen, Frank Neven, Dries Van Dyck, Aalt D. J. van Dijk, Roeland C. H. J. van Ham

Proceedings of the ICDM 2009, 2009

2008

High-throughput bioinformatics with the Cyrille2 pipeline system.

Mark W. E. J. Fiers, Ate van der Burgt, Erwin Datema, Joost C. W. de Groot, Roeland C. H. J. van Ham

BMC Bioinform., 2008

Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control.

Aalt D. J. van Dijk, Cajo J. F. ter Braak, Richard G. H. Immink, Gerco C. Angenent, Roeland C. H. J. van Ham

Bioinform., 2008

Predicting sub-Golgi localization of type II membrane proteins.

Aalt D. J. van Dijk, D. Bosch, Cajo J. F. ter Braak, A. R. van der Krol, Roeland C. H. J. van Ham

Bioinform., 2008

2007

The Use of Multiple Hierarchically Independent Gene Ontology Terms in Gene Function Prediction and Genome Annotation.

Yiannis Kourmpetis, Ate van der Burgt, Marco C. A. M. Bink, Cajo J. F. ter Braak, Roeland C. H. J. van Ham

Silico Biol., 2007

2004

Allermatch(tm), a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines.

Mark W. E. J. Fiers, Gijs A. Kleter, Herman Nijland, Jan Peter Nap, Roeland C. H. J. van Ham

BMC Bioinform., 2004