Roded Sharan
Orcid: 0000-0001-8363-4882Affiliations:
- Tel Aviv University, Blavatnik School of Computer Science, Israel
According to our database1,
Roded Sharan
authored at least 124 papers
between 1996 and 2024.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
On csauthors.net:
Bibliography
2024
Frontiers Bioinform., 2024
An Integer Programming Framework for Identifying Stable Components in Asynchronous Boolean Networks.
Proceedings of the Research in Computational Molecular Biology, 2024
Proceedings of the From Computational Logic to Computational Biology, 2024
2023
2022
Deep Unfolding for Non-Negative Matrix Factorization with Application to Mutational Signature Analysis.
J. Comput. Biol., 2022
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures.
J. Comput. Biol., 2022
Predicting genetic interactions, cell line dependencies and drug sensitivities with variational graph auto-encoder.
Frontiers Bioinform., 2022
2021
A data-driven approach for constructing mutation categories for mutational signature analysis.
PLoS Comput. Biol., 2021
An automated approach for determining the number of components in non-negative matrix factorization with application to mutational signature learning.
Mach. Learn. Sci. Technol., 2021
ANAT 3.0: a framework for elucidating functional protein subnetworks using graph-theoretic and machine learning approaches.
BMC Bioinform., 2021
Long reads capture simultaneous enhancer-promoter methylation status for cell-type deconvolution.
Bioinform., 2021
2020
J. Comput. Biol., 2020
Proceedings of the Research in Computational Molecular Biology, 2020
DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020
2019
Bioinform., 2019
A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer.
Proceedings of the Research in Computational Molecular Biology, 2019
2018
Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018
Proceedings of the Research in Computational Molecular Biology, 2018
2017
A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer.
PLoS Comput. Biol., 2017
BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions.
PLoS Comput. Biol., 2017
Algorithms Mol. Biol., 2017
BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract).
Proceedings of the Research in Computational Molecular Biology, 2017
2016
Bioinform., 2016
Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016
2015
Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer.
PLoS Comput. Biol., 2015
2014
J. Comput. Biol., 2014
A minimum-labeling approach for reconstructing protein networks across multiple conditions.
Algorithms Mol. Biol., 2014
2013
PLoS Comput. Biol., 2013
The Approximability of Shortest Path-Based Graph Orientations of Protein-Protein Interaction Networks.
J. Comput. Biol., 2013
Algorithms Mol. Biol., 2013
2012
Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks.
PLoS Comput. Biol., 2012
J. Comput. Biol., 2012
Commun. ACM, 2012
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Approximation Algorithms and Hardness Results for Shortest Path Based Graph Orientations.
Proceedings of the Combinatorial Pattern Matching - 23rd Annual Symposium, 2012
2011
PLoS Comput. Biol., 2011
Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect.
PLoS Comput. Biol., 2011
J. Comput. Biol., 2011
J. Comput. Biol., 2011
Internet Math., 2011
Bioinform., 2011
Bioinform., 2011
Proceedings of the Fourth International Conference on Similarity Search and Applications, 2011
2010
PLoS Comput. Biol., 2010
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.
PLoS Comput. Biol., 2010
J. Bioinform. Comput. Biol., 2010
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010
2009
Nucleic Acids Res., 2009
Discret. Math., 2009
2008
An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Proceedings of the German Conference on Bioinformatics, 2008
Proceedings of the ECCB'08 Proceedings, 2008
Proceedings of the Protein-protein Interactions and Networks: Identification, 2008
2007
Discret. Appl. Math., 2007
A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data.
Bioinform., 2007
Constraint-based functional similarity of metabolic genes: going beyond network topology.
Bioinform., 2007
Identification of conserved protein complexes based on a model of protein network evolution.
Bioinform., 2007
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
2006
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks.
J. Comput. Biol., 2006
J. Bioinform. Comput. Biol., 2006
BMC Bioinform., 2006
BMC Bioinform., 2006
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006
A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
J. Comput. Syst. Sci., 2005
Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
J. Comput. Biol., 2005
J. Comput. Biol., 2005
BMC Bioinform., 2005
Proceedings of the Systems Biology and Regulatory Genomics, 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
Nucleic Acids Res., 2004
J. Comput. Biol., 2004
Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification.
INFORMS J. Comput., 2004
Discret. Appl. Math., 2004
Proceedings of the Biocomputing 2004, 2004
Proceedings of the Machine Learning, 2004
2003
Bioinform., 2003
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003
CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003
2002
PhD thesis, 2002
Proceedings of the Algorithm Theory, 2002
Discovering statistically significant biclusters in gene expression data.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
2001
SIAM J. Comput., 2001
Electron. Colloquium Comput. Complex., 2001
Discret. Appl. Math., 2001
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001
2000
SIAM J. Comput., 2000
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
Proceedings of the Combinatorial Pattern Matching, 11th Annual Symposium, 2000
1996
A New <i>NC</i>Algorithm for Perfect Matching in Bipartite Cubic Graphs.
Proceedings of the Fourth Israel Symposium on Theory of Computing and Systems, 1996