Robin D. Dowell

According to our database, Robin D. Dowell authored at least 13 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Internal and external normalization of nascent RNA sequencing run-on experiments.

Zachary L. Maas, Robin D. Dowell

BMC Bioinform., December, 2024

2020

Two-stage ML Classifier for Identifying Host Protein Targets of the Dengue Protease.

Jacob T. Stanley, Alison R. Gilchrist, Alex C. Stabell, Mary A. Allen, Sara L. Sawyer, Robin D. Dowell

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2017

An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq.

Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser, Robin D. Dowell

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Model based heritability scores for high-throughput sequencing data.

Pratyaydipta Rudra, W. Jenny Shi, Brian Vestal, Pamela H. Russell, Aaron Odell, Robin D. Dowell, Richard Radcliffe, Laura M. Saba, Katerina J. Kechris

BMC Bioinform., 2017

A generative model for the behavior of RNA polymerase.

Joseph Azofeifa, Robin D. Dowell

Bioinform., 2017

2016

A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation.

David A. Knox, Robin D. Dowell

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

2014

Inferring ancestry in mouse genomes using a hidden Markov model.

Daniel Malmer, Phillip Andrew Richmond, Aaron Odell, Richard Radcliffe, Robin D. Dowell

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

FStitch: a fast and simple algorithm for detecting nascent RNA transcripts.

Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser, Robin D. Dowell

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2011

Discovering Regulatory Overlapping RNA Transcripts.

Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford

J. Comput. Biol., 2011

2007

Automated Discovery of Functional Generality of Human Gene Expression Programs.

Georg K. Gerber, Robin D. Dowell, Tommi S. Jaakkola, David K. Gifford

PLoS Comput. Biol., 2007

2006

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.

Robin D. Dowell, Sean R. Eddy

BMC Bioinform., 2006

2004

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.

Robin D. Dowell, Sean R. Eddy

BMC Bioinform., 2004

2001

The Distributed Annotation System.

Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein

BMC Bioinform., 2001