Robert R. Freimuth

According to our database, Robert R. Freimuth authored at least 45 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup.

Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece D. Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams

J. Am. Medical Informatics Assoc., January, 2024

2023

Representing NIH Genetic Test Registry Data in the FHIR Genomic Study Resource.

Aly Khalifa, Robert R. Freimuth

Proceedings of the Healthcare Transformation with Informatics and Artificial Intelligence, 2023

2022

Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine.

Yiqing Zhao, Matthew Brush, Chen Wang, Alex H. Wagner, Hongfang Liu, Robert R. Freimuth

Bioinform., November, 2022

Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions.

Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen

BMC Medical Informatics Decis. Mak., 2022

A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources.

Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams

J. Am. Medical Informatics Assoc., 2022

2021

Genomic considerations for FHIR®; eMERGE implementation lessons.

Mullai Murugan, Lawrence J. Babb, Casey Overby Taylor, Luke V. Rasmussen, Robert R. Freimuth, Eric Venner, Fei Yan, Victoria Yi, Stephen J. Granite, Hana Zouk, Samuel J. Aronson, Kevin Power, Alexander Fedotov, David R. Crosslin, David Fasel, Gail P. Jarvik, Hakon Hakonarson, Hana Bangash, Iftikhar J. Kullo, John J. Connolly, Jordan G. Nestor, Pedro J. Caraballo, Wei-Qi Wei, Ken Wiley, Heidi L. Rehm, Richard A. Gibbs

J. Biomed. Informatics, 2021

Recommendations for the safe, effective use of adaptive CDS in the US healthcare system: an AMIA position paper.

Carolyn Petersen, Jeffery Smith, Robert R. Freimuth, Kenneth W. Goodman, Gretchen Purcell Jackson, Joseph L. Kannry, Hongfang Liu, Subha Madhavan, Dean F. Sittig, Adam Wright

J. Am. Medical Informatics Assoc., 2021

Infobuttons for Genomic Medicine: Requirements and Barriers.

Luke V. Rasmussen, John J. Connolly, Guilherme Del Fiol, Robert R. Freimuth, Douglas B. Pet, Josh F. Peterson, Brian H. Shirts, Justin B. Starren, Marc S. Williams, Nephi Walton, Casey Overby Taylor

Appl. Clin. Inform., 2021

Modeling Variant Annotation (VA) Therapeutic Association Statements using a SEPIO-Based Workflow.

Yiqing Zhao, Matthew Brush, Hongfang Liu, Robert R. Freimuth

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation of Molecular Variation.

Alex H. Wagner, Lawrence J. Babb, Melissa S. Cline, Helen Schuilenburg, Tristan Nelson, Robert R. Freimuth, Reece Hart

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Content in Context - Individualizing Knowledge Resources for Delivery at the Point of Care.

Jane L. Shellum, Davide Sottara, Robert R. Freimuth, Aaron Nathan, Adam M. Bartscher

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Sync for Genes: Making Clinical Genomics Available for Precision Medicine at the Point-of-Care.

Stephanie J. Garcia, Teresa Zayas-Cabán, Robert R. Freimuth

Appl. Clin. Inform., 2020

2019

Automated Extraction of Computable Clinical Decision Support Rules from an Electronic Health Record (EHR) System.

Branden C. Hickey, Adam M. Bartscher, Marc Sainvil, Robert R. Freimuth, Jane L. Shellum, Davide Sottara

Proceedings of the AMIA 2019, 2019

Sync for Genes: Integrating Genetic Information at the Point of Care.

Stephanie Garcia, Robert R. Freimuth, David E. Jones, Robert P. Milius

Proceedings of the AMIA 2019, 2019

2018

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example.

Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group

J. Am. Medical Informatics Assoc., 2018

A Scalable Encoding Scheme for Clinical Genomic Results Delivered Through Web Services and a Mobile Application.

Shashwat Nagar, Richard C. Kiefer, Robert R. Freimuth

Proceedings of the AMIA 2018, 2018

2017

Development & Implementation of a Clinical Decision Support Tool for Familial Hypercholesterolemia.

Ali Hasnie, Pedro J. Caraballo, Robert R. Freimuth, Iftikhar J. Kullo

Proceedings of the AMIA 2017, 2017

2016

The genomic CDS sandbox: An assessment among domain experts.

Ayesha Aziz, Kensaku Kawamoto, Karen Eilbeck, Marc S. Williams, Robert R. Freimuth, Mark A. Hoffman, Luke V. Rasmussen, Casey Lynnette Overby, Brian H. Shirts, James M. Hoffman, Brandon M. Welch

J. Biomed. Informatics, 2016

Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting.

Laura K. Wiley, Peter Tarczy-Hornoch, Joshua C. Denny, Robert R. Freimuth, Casey L. Overby, Nigam Shah, Ross D. Martin, Indra Neil Sarkar

J. Am. Medical Informatics Assoc., 2016

An informatics research agenda to support precision medicine: seven key areas.

Jessica D. Tenenbaum, Paul Avillach, Marge M. Benham-Hutchins, Matthew K. Breitenstein, Erin L. Crowgey, Mark A. Hoffman, Xia Jiang, Subha Madhavan, John E. Mattison, Radhakrishnan Nagarajan, Bisakha Ray, Dmitriy Shin, Shyam Visweswaran, Zhongming Zhao, Robert R. Freimuth

J. Am. Medical Informatics Assoc., 2016

Developing knowledge resources to support precision medicine: principles from the Clinical Pharmacogenetics Implementation Consortium (CPIC).

James M. Hoffman, Henry M. Dunnenberger, J. Kevin Hicks, Kelly E. Caudle, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Teri E. Klein, Josh F. Peterson

J. Am. Medical Informatics Assoc., 2016

Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard.

Casey L. Overby, Guilherme Del Fiol, Wendy S. Rubinstein, Donna R. Maglott, Tristan Nelson, Aleksandar Milosavljevic, Christa Martin, Scott Goehringer, Robert R. Freimuth, Marc S. Williams, Bret S. E. Heale

Appl. Clin. Inform., 2016

Practical considerations for implementing genomic information resources.

Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen

Appl. Clin. Inform., 2016

Translational Bioinformatics 101.

Jessica D. Tenenbaum, Subha Madhavan, Robert R. Freimuth, Joshua C. Denny, Lewis J. Frey

Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Towards a Standard Ontology Metadata Model.

Hua Min, Stuart Turner, Sherri de Coronado, Brian Davis, Trish Whetzel, Robert R. Freimuth, Harold R. Solbrig, Richard C. Kiefer, Michael Riben, Grace A. Stafford, Lawrence W. Wright, Riki Ohira

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

The Clinical Pharmacogenetics Implementation Consortium (CPIC) Term Standardization for Clinical Pharmacogenetic Test Results: Alleles and Phenotypes.

James M. Hoffman, Henry M. Dunnenberger, Jonathan D. Burlison, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Stuart A. Scott, Josh F. Peterson, Heidi L. Rehm, Teri E. Klein, Mary V. Relling, Kelly E. Caudle

Proceedings of the Summit on Clinical Research Informatics, 2016

Knowledge as a Service at the Point of Care.

Jane L. Shellum, Robert R. Freimuth, Steve G. Peters, Rick Nishimura, Rajeev Chaudhry, Steve Demuth, Amy Knopp, Tim Miksch, Dawn S. Milliner

Proceedings of the AMIA 2016, 2016

2015

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies.

Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier

BMC Medical Informatics Decis. Mak., 2015

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.

Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby

J. Am. Medical Informatics Assoc., 2015

Public Implementation Resources for Genomic Medicine.

Josh F. Peterson, Marc S. Williams, Casey L. Overby, Robert R. Freimuth, Iftikhar J. Kullo

Proceedings of the AMIA 2015, 2015

Creating Shareable Clinical Decision Support Rules for a Pharmacogenomics Clinical Guideline Using Structured Knowledge Representation.

Margaret K. Linan, Davide Sottara, Robert R. Freimuth

Proceedings of the AMIA 2015, 2015

2014

A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project.

Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams

Proceedings of the AMIA 2014, 2014

Evaluation of RxNorm for Medication Clinical Decision Support.

Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute

Proceedings of the AMIA 2014, 2014

2013

A weighted random forests approach to improve predictive performance.

Stacey J. Winham, Robert R. Freimuth, Joanna M. Biernacka

Stat. Anal. Data Min., 2013

Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.

Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute

J. Biomed. Informatics, 2013

Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study.

Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute

J. Biomed. Informatics, 2013

A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute

J. Am. Medical Informatics Assoc., 2013

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics.

Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce

Proceedings of the MEDINFO 2013, 2013

Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements.

Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute

Proceedings of the AMIA 2013, 2013

2012

Life sciences domain analysis model.

Robert R. Freimuth, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki, Sue Pan, Andrew J. Buckler, Todd H. Stokes, Anna T. Fernandez, Ian Fore, Kenneth H. Buetow, Juli D. Klemm

J. Am. Medical Informatics Assoc., 2012

SNP interaction detection with Random Forests in high-dimensional genetic data.

Stacey J. Winham, Colin L. Colby, Robert R. Freimuth, Xin Wang, Mariza de Andrade, Marianne Huebner, Joanna M. Biernacka

BMC Bioinform., 2012

Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results.

Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data.

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies.

Jyotishman Pathak, Richard C. Kiefer, Robert R. Freimuth, Suzette J. Bielinski, Christopher G. Chute

Proceedings of the AMIA 2012, 2012

2008

caBIG™ Compatibility Review System: Software to Support the Evaluation of Applications Using Defined Interoperability Criteria.

Robert R. Freimuth, Michael W. Schauer, Preeti Lodha, Poornima Govindrao, Rakesh Nagarajan, Christopher G. Chute

Proceedings of the AMIA 2008, 2008