Robert M. Stephens

According to our database, Robert M. Stephens authored at least 20 papers between 2001 and 2016.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2016

Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.

Ma Liang, Castle Raley, Xin Zheng, Geetha Kutty, Emile Gogineni, Brad T. Sherman, Qiang Sun, Xiongfong Chen, Thomas Skelly, Kristine Jones, Robert M. Stephens, Bin Zhou, William W. Lau, Calvin A. Johnson, Tomozumi Imamichi, Minkang Jiang

BioData Min., 2016

2014

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations.

Hue Vuong, Robert M. Stephens, Natalia Volfovsky

Bioinform., 2014

2013

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.

Regina Z. Cer, Duncan E. Donohue, Uma Mudunuri, Nuri A. Temiz, Michael A. Loss, Nathan J. Starner, Goran N. Halusa, Natalia Volfovsky, Ming Yi, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens

Nucleic Acids Res., 2013

SRAdb: query and use public next-generation sequencing data from within R.

Yuelin Zhu, Robert M. Stephens, Paul S. Meltzer, Sean R. Davis

BMC Bioinform., 2013

2012

DAVID-WS: a stateful web service to facilitate gene/protein list analysis.

Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki

Bioinform., 2012

2011

Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes.

Regina Z. Cer, Kevin H. Bruce, Uma Mudunuri, Ming Yi, Natalia Volfovsky, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens

Nucleic Acids Res., 2011

2010

MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains.

Keiko Akagi, Robert M. Stephens, Jingfeng Li, Evgenji Evdokimov, Michael R. Kuehn, Natalia Volfovsky, David E. Symer

Nucleic Acids Res., 2010

2009

<i>IC</i>₅₀-to-<i>K</i>_i: a web-based tool for converting <i>IC</i>₅₀ to <i>K</i>_i values for inhibitors of enzyme activity and ligand binding.

Regina Z. Cer, Uma Mudunuri, Robert M. Stephens, Frank J. Lebeda

Nucleic Acids Res., 2009

Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis.

Ming Yi, Uma Mudunuri, Anney Che, Robert M. Stephens

BMC Bioinform., 2009

bioDBnet: the biological database network.

Uma Mudunuri, Anney Che, Ming Yi, Robert M. Stephens

Bioinform., 2009

Pathway Analysis: Pathway Signatures and Classification.

Ming Yi, Robert M. Stephens

Proceedings of the Statistics and Informatics in Molecular Cancer Research., 2009

2008

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.

Yuelin Zhu, Sean R. Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen

Bioinform., 2008

2007

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Da Wei Huang, Brad T. Sherman, Qina Tan, Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki

Nucleic Acids Res., 2007

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Brad T. Sherman, Da Wei Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki

BMC Bioinform., 2007

2006

botXminer: mining biomedical literature with a new web-based application.

Uma Mudunuri, Robert M. Stephens, David Bruining, David Liu, Frank J. Lebeda

Nucleic Acids Res., 2006

WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data.

Ming Yi, Jay D. Horton, Jonathan C. Cohen, Helen H. Hobbs, Robert M. Stephens

BMC Bioinform., 2006

Transcriptomic response to differentiation induction.

G. W. Patton, Robert M. Stephens, I. A. Sidorov, X. Xiao, Richard A. Lempicki, Dimiter S. Dimitrov, Robert H. Shoemaker, G. Tudor

BMC Bioinform., 2006

2005

High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).

Barry Zeeberg, Haiying Qin, Sudarshan Narasimhan, Margot Sunshine, Hong Cao, David W. Kane, Mark Reimers, Robert M. Stephens, David Bryant, Stanley K. Burt, Eldad Elnekave, Danielle M. Hari, Thomas A. Wynn, Charlotte Cunningham-Rundles, Donn M. Stewart, David Nelson, John N. Weinstein

BMC Bioinform., 2005

2004

RTCGD: retroviral tagged cancer gene database.

Keiko Akagi, Takeshi Suzuki, Robert M. Stephens, Nancy A. Jenkins, Neal G. Copeland

Nucleic Acids Res., 2004

2001

The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database.

John S. Garavelli, Zhenglin Hou, Nagarajan Pattabiraman, Robert M. Stephens

Nucleic Acids Res., 2001