Robert Leaman

CoRR, 2023

Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2023

2022

Comprehensive identification of Long Covid articles with human-in-the-loop machine learning.

[BibT_eX]

[DOI]

CoRR, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.

[BibT_eX]

[DOI]

CoRR, 2022

NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2022

2021

Long Covid: A Comprehensive Collection of Articles Regarding Long-Haul Symptoms in COVID-19 Survivors.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

NLM-Chem, a Gold-Standard Corpus for Chemical Entity Recognition in PubMed Full Text Literature.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP).

[BibT_eX]

[DOI]

CoRR, 2020

Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view.

[BibT_eX]

[DOI]

Lana Yeganova

CoRR, 2020

A Comprehensive Dictionary and Term Variation Analysis for COVID-19 and SARS-CoV-2.

[BibT_eX]

[DOI]

Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020

2019

PubTator central: automated concept annotation for biomedical full text articles.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2019

Text Mining and Machine Learning for Precision Medicine.

[BibT_eX]

[DOI]

Rikke Linnemann Nielsen

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Biomedical Mention Disambiguation using a Deep Learning Approach.

[BibT_eX]

[DOI]

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

A Text-Mining System for Concept Annotation in Biomedical Full Text Articles.

[BibT_eX]

[DOI]

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

ezTag: tagging biomedical concepts via interactive learning.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2018

2016

Beyond accuracy: creating interoperable and scalable text-mining web services.

[BibT_eX]

[DOI]

Bioinform., 2016

TaggerOne: joint named entity recognition and normalization with semi-Markov Models.

[BibT_eX]

[DOI]

Bioinform., 2016

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2016

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2016

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2016

Mining chemical patents with an ensemble of open systems.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2016

Crowdsourcing in biomedicine: challenges and opportunities.

[BibT_eX]

[DOI]

Briefings Bioinform., 2016

Large-scale Semantic Indexing with Biomedical Ontologies.

[BibT_eX]

[DOI]

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015

SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedical Text.

[BibT_eX]

[DOI]

IEEE J. Biomed. Health Informatics, 2015

tmChem: a high performance approach for chemical named entity recognition and normalization.

[BibT_eX]

[DOI]

J. Cheminformatics, 2015

The CHEMDNER corpus of chemicals and drugs and its annotation principles.

[BibT_eX]

[DOI]

J. Cheminformatics, 2015

Challenges in clinical natural language processing for automated disorder normalization.

[BibT_eX]

[DOI]

Ritu Khare

J. Biomed. Informatics, 2015

Session Introduction.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

NCBI disease corpus: A resource for disease name recognition and concept normalization.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2014

<i>tmBioC</i>: improving interoperability of text-mining tools with BioC.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2014

Session introduction.

[BibT_eX]

[DOI]

Kevin Bretonnel Cohen

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Automated Disease Normalization with Low Rank Approximations.

[BibT_eX]

[DOI]

Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

SimConcept: a hybrid approach for simplifying composite named entities in biomedicine.

[BibT_eX]

[DOI]

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Disease named entity recognition and normalization with DNorm.

[BibT_eX]

[DOI]

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

DNorm: disease name normalization with pairwise learning to rank.

[BibT_eX]

[DOI]

Bioinform., 2013

Session introduction.

[BibT_eX]

[DOI]

Kevin Bretonnel Cohen

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

NCBI at 2013 ShARe/CLEF eHealth Shared Task: Disorder Normalization in Clinical Notes with Dnorm.

[BibT_eX]

[DOI]

Ritu Khare

Proceedings of the Working Notes for CLEF 2013 Conference , 2013

DNorm: A New Method and Online Tool for Disease Name Normalization.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

NCBI Disease Corpus: A Valuable Resource for Disease Name Recognition and Normalization.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

2012

A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2012

2011

Enhancing phylogeography by improving geographical information from GenBank.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

The DIEGO Lab Graph Based Gene Normalization System.

[BibT_eX]

[DOI]

Ryan Sullivan

Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

2010

Efficient Extraction of Protein-Protein Interactions from Full-Text Articles.

[BibT_eX]

[DOI]

Jörg Hakenberg

Nguyen Ha Vo

Siddhartha Jonnalagadda

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities.

[BibT_eX]

[DOI]

Siddhartha Jonnalagadda

Trevor Cohen

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2010

Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks.

[BibT_eX]

[DOI]

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2008

BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition.

[BibT_eX]

[DOI]