Robert Küffner

According to our database, Robert Küffner authored at least 20 papers between 1999 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2017

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis.

Maximilian Hastreiter, Tim Jeske, Jonathan Hoser, Michael Kluge, Kaarin Ahomaa, Marie-Sophie Friedl, Sebastian J. Kopetzky, Jan-Dominik Quell, Hans-Werner Mewes, Robert Küffner

Bioinform., 2017

2015

DREAMTools: a Python package for scoring collaborative challenges.

Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez

F1000Research, 2015

Addressing false discoveries in network inference.

Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer, Robert Küffner

Bioinform., 2015

2013

A Turing test for artificial expression data.

Robert Maier, Ralf Zimmer, Robert Küffner

Bioinform., 2013

2012

Rigorous assessment of gene set enrichment tests.

Haroon Naeem, Ralf Zimmer, Pegah Tavakkolkhah, Robert Küffner

Bioinform., 2012

Inferring gene regulatory networks by ANOVA.

Robert Küffner, Tobias Petri, Pegah Tavakkolkhah, Lukas Windhager, Ralf Zimmer

Bioinform., 2012

2011

Experiment Specific Expression Patterns.

Tobias Petri, Robert Küffner, Ralf Zimmer

J. Comput. Biol., 2011

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.

Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer

Bioinform., 2011

2010

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature.

Haroon Naeem, Robert Küffner, Gergely Csaba, Ralf Zimmer

BMC Bioinform., 2010

2009

Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen.

Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, Robert Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer

Inform. Spektrum, 2009

2008

ProSAS: a database for analyzing alternative splicing in the context of protein structures.

Fabian Birzele, Robert Küffner, Franziska Meier, Florian Oefinger, Christian Potthast, Ralf Zimmer

Nucleic Acids Res., 2008

2007

RelEx - Relation extraction using dependency parse trees.

Katrin Fundel, Robert Küffner, Ralf Zimmer

Bioinform., 2007

2006

Reliable gene signatures for microarray classification: assessment of stability and performance.

Chad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer

Bioinform., 2006

Characterization of Protein Interactions.

Robert Küffner, Timo Duchrow, Katrin Fundel, Ralf Zimmer

Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006

2005

Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments.

Katrin Fundel, Robert Küffner, Thomas Aigner, Ralf Zimmer

Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005

Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.

Robert Küffner, Katrin Fundel, Ralf Zimmer

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2001

Executable Petri net models for the analysis of metabolic pathways.

Hartmann J. Genrich, Robert Küffner, Klaus Voss

Int. J. Softw. Tools Technol. Transf., 2001

2000

Pathway analysis in metabolic databases via differential metabolic display (DMD).

Robert Küffner, Ralf Zimmer, Thomas Lengauer

Bioinform., 2000

Analysis of Gene Expression Data with Pathway Scores.

Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999

Pathway analysis in metabolic databases via differetial metabolic display (DMD).

Robert Küffner, Ralf Zimmer, Thomas Lengauer

Proceedings of the German Conference on Bioinformatics, 1999