Robert Gentleman

According to our database, Robert Gentleman authored at least 37 papers between 1996 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The text2term tool to map free-text descriptions of biomedical terms to ontologies.

Rafael S. Gonçalves, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman

Database J. Biol. Databases Curation, January, 2024

nhanesA: achieving transparency and reproducibility in NHANES research.

Laha Ale, Robert Gentleman, Teresa Filshtein Sonmez, Deepayan Sarkar, Christopher Endres

Database J. Biol. Databases Curation, January, 2024

Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms.

Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane

CoRR, 2024

2023

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions.

Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman

Bioinform., March, 2023

2017

VariantTools: an extensible framework for developing and testing variant callers.

Michael F. Lawrence, Robert Gentleman

Bioinform., 2017

2014

Discriminative motif analysis of high-throughput dataset.

Zizhen Yao, Kyle L. MacQuarrie, Abraham P. Fong, Stephen J. Tapscott, Walter L. Ruzzo, Robert Gentleman

Bioinform., 2014

gCMAP: user-friendly connectivity mapping with R.

Thomas Sandmann, Sarah K. Kummerfeld, Robert Gentleman, Richard Bourgon

Bioinform., 2014

Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach.

Oleg Mayba, Florian Gnad, Michael Peyton, Fan Zhang, Kimberly Walter, Pan Du, Melanie A. Huntley, Zhaoshi Jiang, Jinfeng Liu, Peter M. Haverty, Robert Gentleman, Ruiqiang Li, John D. Minna, Yingrui Li, David S. Shames, Zemin Zhang

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013

Software for Computing and Annotating Genomic Ranges.

Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey

PLoS Comput. Biol., 2013

2011

R Language.

Robert Gentleman, Wolfgang Huber, Vincent J. Carey

Proceedings of the International Encyclopedia of Statistical Science, 2011

Towards BioDBcore: a community-defined information specification for biological databases.

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki

Database J. Biol. Databases Curation, 2011

Workshop Introduction.

Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2009

Knowledge based identification of essential signaling from genome-scale siRNA experiments.

Armand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl

BMC Syst. Biol., 2009

flowCore: a Bioconductor package for high throughput flow cytometry.

Florian Hahne, Nolwenn LeMeur, Ryan Remy Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman

BMC Bioinform., 2009

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.

Martin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman

Bioinform., 2009

rtracklayer: an R package for interfacing with genome browsers.

Michael F. Lawrence, Robert Gentleman, Vincent J. Carey

Bioinform., 2009

arrayQualityMetrics - a bioconductor package for quality assessment of microarray data.

Audrey Kauffmann, Robert Gentleman, Wolfgang Huber

Bioinform., 2009

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.

Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby

Bioinform., 2009

<i>DATABASE</i>: A new forum for biological databases and curation.

David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette

Database J. Biol. Databases Curation, 2009

Minimal Covers of Maximal Cliques for Interval Graphs.

Alain C. Vandal, Marston D. E. Conder, Robert Gentleman

Ars Comb., 2009

iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor.

Kyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman

Adv. Bioinformatics, 2009

Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor.

Vincent J. Carey, Robert Gentleman

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Estimating node degree in bait-prey graphs.

Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman

Bioinform., 2008

Using flowViz to visualize flow cytometry data.

Deepayan Sarkar, Nolwenn Le Meur, Robert Gentleman

Bioinform., 2008

Gene set enrichment analysis using linear models and diagnostics.

Assaf P. Oron, Zhen Jiang, Robert Gentleman

Bioinform., 2008

Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.

Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber

Bioinform., 2008

SGDI: System for Genomic Data Integration.

Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy

Proceedings of the Biocomputing 2008, 2008

2007

Graphs in molecular biology.

Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman

BMC Bioinform., 2007

Extensions to gene set enrichment.

Zhen Jiang, Robert Gentleman

Bioinform., 2007

Using GOstats to test gene lists for GO term association.

Seth Falcon, Robert Gentleman

Bioinform., 2007

GGtools: analysis of genetics of gene expression in bioconductor.

Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman

Bioinform., 2007

2005

Local modeling of global interactome networks.

Denise Scholtens, Marc Vidal, Robert Gentleman

Bioinform., 2005

Network structures and algorithms in Bioconductor.

Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman

Bioinform., 2005

2004

matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.

Wolfgang Huber, Robert Gentleman

Bioinform., 2004

A graph-theoretic approach to testing associations between disparate sources of functional genomics data.

Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman

Bioinform., 2004

2003

An extensible application for assembling annotation for genomic data.

Jianhua Zhang, Vincent J. Carey, Robert Gentleman

Bioinform., 2003

1996

Book reviews.

Nozer D. Singpurwalla, Robert Gentleman, Willem J. Heiser, Dibyen Majumdar

Stat. Comput., 1996