Robert G. Beiko

According to our database, Robert G. Beiko authored at least 21 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.

Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur

Nucleic Acids Res., January, 2023

2022

Genome-scale prediction of bacterial promoters.

Miria Bernardino, Robert G. Beiko

Biosyst., 2022

deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes.

Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Jean-Christophe Grenier, Robert G. Beiko, Julie Hussin

Bioinform., 2022

2020

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.

Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur

Nucleic Acids Res., 2020

PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.

Michael A. Peabody, Wing Yin Venus Lau, Gemma Hoad, Baofeng Jia, Finlay Maguire, Kristen L. Gray, Robert G. Beiko, Fiona S. L. Brinkman

Bioinform., 2020

2016

simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes.

Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G. Beiko

Bioinform., 2016

Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees.

Chris Whidden, Robert G. Beiko, Norbert Zeh

Algorithmica, 2016

2014

STAMP: statistical analysis of taxonomic and functional profiles.

Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, Robert G. Beiko

Bioinform., 2014

2013

Fixed-Parameter Algorithms for Maximum Agreement Forests.

Chris Whidden, Robert G. Beiko, Norbert Zeh

SIAM J. Comput., 2013

SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.

Michael S. Porter, Robert G. Beiko

Bioinform., 2013

2011

Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests

Chris Whidden, Robert G. Beiko, Norbert Zeh

CoRR, 2011

Classifying short genomic fragments from novel lineages using composition and homology.

Donovan H. Parks, Norman J. MacDonald, Robert G. Beiko

BMC Bioinform., 2011

2010

Identifying biologically relevant differences between metagenomic communities.

Donovan H. Parks, Robert G. Beiko

Bioinform., 2010

Efficient learning of microbial genotype-phenotype association rules.

Norman J. MacDonald, Robert G. Beiko

Bioinform., 2010

Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments.

Chris Whidden, Robert G. Beiko, Norbert Zeh

Proceedings of the Experimental Algorithms, 9th International Symposium, 2010

2009

Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree.

Jacqueline L. Whalley, Stephen Brooks, Robert G. Beiko

Bioinform., 2009

2007

A two-phase strategy for detecting recombination in nucleotide sequences.

Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan

South Afr. Comput. J., 2007

A simulation test bed for hypotheses of genome evolution.

Robert G. Beiko, Robert L. Charlebois

Bioinform., 2007

2006

Detecting recombination in evolving nucleotide sequences.

Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan

BMC Bioinform., 2006

2005

GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA.

Robert G. Beiko, Robert L. Charlebois

BMC Bioinform., 2005

A word-oriented approach to alignment validation.

Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan

Bioinform., 2005