Robert D. Finn
Orcid: 0000-0001-8626-2148Affiliations:
- European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
- Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn
According to our database1,
Robert D. Finn
authored at least 76 papers
between 1999 and 2023.
Collaborative distances:
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Bibliography
2023
Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters.
Frontiers Bioinform., May, 2023
Nucleic Acids Res., January, 2023
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
PLoS Comput. Biol., 2023
2022
Nucleic Acids Res., 2022
Nucleic Acids Res., 2022
2021
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
Nucleic Acids Res., 2021
Nucleic Acids Res., 2021
Nucleic Acids Res., 2021
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform., 2021
2020
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res., 2020
Bioinform., 2020
2019
Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.
Nucleic Acids Res., 2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019
Nucleic Acids Res., 2019
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations.
Bioinform., 2019
2018
PLoS Comput. Biol., 2018
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.
Nucleic Acids Res., 2018
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.
Nucleic Acids Res., 2018
Nucleic Acids Res., 2018
Nucleic Acids Res., 2018
Proceedings of Workshop on Research Objects (RO2018), 2018
2017
Nucleic Acids Res., 2017
ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services.
F1000Research, 2017
2016
Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes.
PLoS Comput. Biol., 2016
Twenty years of the <i>MEROPS</i> database of proteolytic enzymes, their substrates and inhibitors.
Nucleic Acids Res., 2016
EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data.
Nucleic Acids Res., 2016
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.
Nucleic Acids Res., 2016
Nucleic Acids Res., 2016
Nucleic Acids Res., 2016
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.
Database J. Biol. Databases Curation, 2016
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016
2015
Nucleic Acids Res., 2015
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation, 2015
The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.
Briefings Bioinform., 2015
2014
iPfam: a database of protein family and domain interactions found in the Protein Data Bank.
Nucleic Acids Res., 2014
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
BMC Bioinform., 2014
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.
BMC Bioinform., 2014
2013
Nucleic Acids Res., 2013
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.
BMC Bioinform., 2013
Database J. Biol. Databases Curation, 2013
2012
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012
2011
Nucleic Acids Res., 2011
2010
2009
Bioinform., 2009
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.
Bioinform., 2009
2008
BMC Bioinform., 2008
Briefings Bioinform., 2008
2007
BMC Bioinform., 2007
SCOOP: a simple method for identification of novel protein superfamily relationships.
Bioinform., 2007
2006
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006
2005
iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions.
Bioinform., 2005
2004
1999
Nucleic Acids Res., 1999