Robert A. Edwards

Orcid: 0000-0001-8383-8949

According to our database1, Robert A. Edwards authored at least 33 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
PRFect: a tool to predict programmed ribosomal frameshifts in prokaryotic and viral genomes.
BMC Bioinform., December, 2024

Koverage: Read-coverage analysis for massive (meta)genomics datasets.
J. Open Source Softw., April, 2024

Solving genomic puzzles: computational methods for metagenomic binning.
Briefings Bioinform., 2024

2023
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Bioinform., October, 2023

Classification Confidence in Exploratory Learning: A User's Guide.
Mach. Learn. Knowl. Extr., June, 2023

2022
Ten simple rules and a template for creating workflows-as-applications.
PLoS Comput. Biol., December, 2022

Organizing the bacterial annotation space with amino acid sequence embeddings.
BMC Bioinform., December, 2022

Estimating Classification Confidence Using Kernel Densities.
CoRR, 2022

2021
RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.
Patterns, 2021

2020
PhANNs, a fast and accurate tool and web server to classify phage structural proteins.
PLoS Comput. Biol., November, 2020

2019
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.
Bioinform., 2019

PHANOTATE: a novel approach to gene identification in phage genomes.
Bioinform., 2019

2018
Searching the Sequence Read Archive using Jetstream and Wrangler.
Proceedings of the Practice and Experience on Advanced Research Computing, 2018

2017
PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.
Bioinform., 2017

PMAnalyzer: a new web interface for bacterial growth curve analysis.
Bioinform., 2017

2016
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data.
Bioinform., 2016

2014
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).
Nucleic Acids Res., 2014

2013
Combining de novo and reference-guided assembly with scaffold_builder.
Source Code Biol. Medicine, 2013

2012
PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity.
BMC Bioinform., 2012

Identification and removal of ribosomal RNA sequences from metatranscriptomes.
Bioinform., 2012

PHACTS, a computational approach to classifying the lifestyle of phages.
Bioinform., 2012

Real Time Metagenomics: Using <i>k</i>-mers to annotate metagenomes.
Bioinform., 2012

Reference-independent comparative metagenomics using cross-assembly: crAss.
Bioinform., 2012

2011
Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets.
BMC Bioinform., 2011

Quality control and preprocessing of metagenomic datasets.
Bioinform., 2011

2010
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.
BMC Bioinform., 2010

Accessing the SEED genome databases via Web services API: tools for programmers.
BMC Bioinform., 2010

2009
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.
PLoS Comput. Biol., 2009

Deviations from Ultrametricity in Phage Protein Distances.
Open Syst. Inf. Dyn., 2009

2008
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
BMC Bioinform., 2008

2007
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
Nucleic Acids Res., 2007

2006
An application of statistics to comparative metagenomics.
BMC Bioinform., 2006

Finding novel genes in bacterial communities isolated from the environment.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006


  Loading...