Richard J. Edwards

According to our database, Richard J. Edwards authored at least 16 papers between 2004 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Phylogenetic Tree Rooting.

Richard J. Edwards

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Maria Victoria Schneider, Philippa C. Griffin, Sonika Tyagi, Madison Flannery, Saravanan Dayalan, Simon Gladman, Nathan S. Watson-Haigh, Philipp E. Bayer, Michael A. Charleston, Ira Cooke, Rob Cook, Richard J. Edwards, David Edwards, Dominique Gorse, Malcolm J. McConville, David Powell, Marc R. Wilkins, Andrew Lonie

Briefings Bioinform., 2019

2015

SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks.

Emily Olorin, Kevin T. O'Brien, Nicolas Palopoli, Åsa Pérez-Bercoff, Denis C. Shields, Richard J. Edwards

F1000Research, 2015

QSLiMFinder: improved short linear motif prediction using specific query protein data.

Nicolas Palopoli, Kieren T. Lythgow, Richard J. Edwards

Bioinform., 2015

2012

ELM - the database of eukaryotic linear motifs.

Holger Dinkel, Sushama Michael, Robert J. Weatheritt, Norman E. Davey, Kim Van Roey, Brigitte Altenberg, Grischa Toedt, Bora Uyar, Markus Seiler, Aidan Budd, Lisa Jödicke, Marcel A. Dammert, Christian Schroeter, Maria Hammer, Tobias Schmidt, Peter Jehl, Caroline McGuigan, Magdalena Dymecka, Claudia Chica, Katja Luck, Allegra Via, Andrew Chatr-aryamontri, Niall J. Haslam, Gleb Grebnev, Richard J. Edwards, Michel O. Steinmetz, Heike Meiselbach, Francesca Diella, Toby J. Gibson

Nucleic Acids Res., 2012

2011

SLiMSearch 2.0: biological context for short linear motifs in proteins.

Norman E. Davey, Niall J. Haslam, Denis C. Shields, Richard J. Edwards

Nucleic Acids Res., 2011

2010

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

Norman E. Davey, Niall J. Haslam, Denis C. Shields, Richard J. Edwards

Nucleic Acids Res., 2010

Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.

Norman E. Davey, Richard J. Edwards, Denis C. Shields

BMC Bioinform., 2010

SLiMSearch: A Webserver for Finding Novel Occurrences of Short Linear Motifs in Proteins, Incorporating Sequence Context.

Norman E. Davey, Niall J. Haslam, Denis C. Shields, Richard J. Edwards

Proceedings of the Pattern Recognition in Bioinformatics, 2010

2009

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.

Norman E. Davey, Denis C. Shields, Richard J. Edwards

Bioinform., 2009

2008

CompariMotif: quick and easy comparisons of sequence motifs.

Richard J. Edwards, Norman E. Davey, Denis C. Shields

Bioinform., 2008

2007

The SLiMDisc server: short, linear motif discovery in proteins.

Norman E. Davey, Richard J. Edwards, Denis C. Shields

Nucleic Acids Res., 2007

2006

Absolute Net Charge and the Biological Activity of Oligopeptides.

Laavanya Parthasarathi, Marc Devocelle, Chresten R. Søndergaard, Ivan Baran, Colm O'Dushlaine, Norman E. Davey, Richard J. Edwards, Niamh Moran, Dermot Kenny, Denis C. Shields

J. Chem. Inf. Model., 2006

2005

BADASP: predicting functional specificity in protein families using ancestral sequences.

Richard J. Edwards, Denis C. Shields

Bioinform., 2005

2004

GASP: Gapped Ancestral Sequence Prediction for proteins.

Richard J. Edwards, Denis C. Shields

BMC Bioinform., 2004

Investigating the 3D Conformation of N-Terminally Constrained Oligopeptides.

Itizar Frades, Richard J. Edwards, Denis C. Shields

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004