Richard D. Boyce

According to our database, Richard D. Boyce authored at least 55 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Causal feature selection using a knowledge graph combining structured knowledge from the biomedical literature and ontologies: A use case studying depression as a risk factor for Alzheimer's disease.

Scott A. Malec, Sanya Bathla Taneja, Steven M. Albert, C. Elizabeth Shaaban, Helmet T. Karim, Arthur S. Levine, Paul Munro, Tiffany J. Callahan, Richard D. Boyce

J. Biomed. Informatics, June, 2023

Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions.

Sanya Bathla Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce

J. Biomed. Informatics, April, 2023

Ontologizing health systems data at scale: making translational discovery a reality.

Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn

npj Digit. Medicine, 2023

An Open-Source Knowledge Graph Ecosystem for the Life Sciences.

Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter

CoRR, 2023

2022

Falls prediction using the nursing home minimum dataset.

Richard D. Boyce, Olga Kravchenko, Subashan Perera, Jordan F. Karp, Sandra L. Kane-Gill, Charles F. Reynolds, Steven M. Albert, Steven M. Handler

J. Am. Medical Informatics Assoc., 2022

Coordinated use of Health Level 7 standards to support clinical decision support: Case study with shared decision making and drug-drug interactions.

Henrik Thiess, Guilherme Del Fiol, Daniel C. Malone, Ryan Cornia, Max Sibilla, Bryn Rhodes, Richard D. Boyce, Kensaku Kawamoto, Thomas J. Reese

Int. J. Medical Informatics, 2022

Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions.

Sanya Bathla Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce

CoRR, 2022

Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality.

Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn

CoRR, 2022

Evaluation of Shared Decision-Making for Concomitant Warfarin and NSAID Medications using the DDInteract App.

Ainhoa Gomez Lumbreras, Thomas J. Reese, Guilherme Del Fiol, Jason Hurwitz, Kensaku Kawamoto, Mary Brown, Richard D. Boyce, Daniel C. Malone

Proceedings of the AMIA 2022, 2022

Developing and Evaluation of Computational Phenotypes of Metastatic Breast Cancer Using All of Us Data.

Chenyu Li, Israel Dilan-Pantojas, Shyam Visweswaran, Michael J. Becich, Xia Jiang, Richard D. Boyce

Proceedings of the AMIA 2022, 2022

Standardizing Natural Products in Adverse Event Reports with Siamese Recurrent Networks.

Tanupat Boonchalermvichien, Sanya Bathla Taneja, Sandra Clark Karcher, Richard D. Boyce

Proceedings of the AMIA 2022, 2022

2021

Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance.

Scott A. Malec, Peng Wei, Elmer V. Bernstam, Richard D. Boyce, Trevor Cohen

J. Biomed. Informatics, 2021

Introducing Information Retrieval for Biomedical Informatics Students.

Sanya Bathla Taneja, Richard D. Boyce, William T. Reynolds, Denis Newman-Griffis

CoRR, 2021

Overriding Drug-Drug Interaction Alerts in Clinical Decision Support Systems: A Scoping Review.

Lorenzo Villa Zapata, Vignesh Subbian, Richard D. Boyce, Philip D. Hansten, John R. Horn, Sheila M. Gephart, Andrew Romero, Daniel C. Malone

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020

Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment.

Amy J. Grizzle, Lisa E. Hines, Daniel C. Malone, Olga Kravchenko, Harry Hochheiser, Richard D. Boyce

J. Biomed. Informatics, 2020

Mapping Dental Diagnostic Concepts to SNOMED CT: A Pilot Study.

Yingci Liu, Smitha Edakalavan, Richard D. Boyce

Proceedings of the AMIA 2020, 2020

Automatically classifying the evidence type of drug-drug interaction research papers as a step toward computer supported evidence curation.

Linh K. Hoang, Richard D. Boyce, Nigel Bosch, Britney Stottlemyer, Mathias Brochhausen, Jodi Schneider

Proceedings of the AMIA 2020, 2020

2019

Open Source Software Sustainability Models: Initial White Paper from the Information Technology for Cancer Research Sustainability and Industry Partnership Work Group.

Y. Ye, Richard D. Boyce, M. K. Davis, Keith O. Elliston, Christos Davatzikos, Andrey Fedorov, Jean-Christophe Fillion-Robin, Ian T. Foster, John R. Gilbertson, Mervi Heiskanen, Juli D. Klemm, Andras Lasso, James V. Miller, M. Morgan, Steve Pieper, Brigitte Raumann, B. Sarachan, G. Savova, Jonathan C. Silverstein, D. Taylor, J. Zelnis, G. Q. Zhang, Michael J. Becich

CoRR, 2019

Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language.

Binh-Phi Nguyen, Thomas J. Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

A Proposal for Determining the Evidence Types of Biomedical Documents Using a Drug-drug Interaction Ontology and Machine Learning.

Linh Hoang, Richard D. Boyce, Mathias Brochhausen, Joseph Utecht, Jodi Schneider

Proceedings of the AAAI 2019 Spring Symposium on Combining Machine Learning with Knowledge Engineering (AAAI-MAKE 2019) Stanford University, 2019

2018

Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse.

John Judkins, Jessica Tay-Sontheimer, Richard D. Boyce, Mathias Brochhausen

J. Biomed. Semant., 2018

Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track.

Dina Demner-Fushman, Kin Wah Fung, Phong Do, Richard D. Boyce, Travis R. Goodwin

Proceedings of the 2018 Text Analysis Conference, 2018

Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC).

Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts

Proceedings of the AMIA 2018, 2018

Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers.

Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Eric Chou, Mathias Brochhausen, John Judkins, Brandon T. Gufford, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine S. McCune

Proceedings of the AMIA 2018, 2018

2017

Electronic Sleep Stage Classifiers: A Survey and VLSI Design Methodology.

Hossein Kassiri, Aditi Chemparathy, Muhammad Tariqus Salam, Richard D. Boyce, Antoine Adamantidis, Roman Genov

IEEE Trans. Biomed. Circuits Syst., 2017

Information needs for making clinical recommendations about potential drug-drug interactions: a synthesis of literature review and interviews.

Katrina M. Romagnoli, Scott D. Nelson, Lisa Hines, Philip E. Empey, Richard D. Boyce, Harry Hochheiser

BMC Medical Informatics Decis. Mak., 2017

Accuracy of an automated knowledge base for identifying drug adverse reactions.

Erica A. Voss, Richard D. Boyce, Patrick B. Ryan, Johan van der Lei, Peter R. Rijnbeek, Martijn J. Schuemie

J. Biomed. Informatics, 2017

Design and evaluation of a pharmacogenomics information resource for pharmacists.

Katrina M. Romagnoli, Richard D. Boyce, Philip E. Empey, Yifan Ning, Solomon Adams, Harry Hochheiser

J. Am. Medical Informatics Assoc., 2017

Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data.

Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan

J. Biomed. Semant., 2017

Automated Screening of Emergency Department Notes for Drug-Associated Bleeding Adverse Events Occurring in Older Adults.

Richard D. Boyce, Jeremy Jao, Taylor Miller, Sandra L. Kane-Gill

Appl. Clin. Inform., 2017

Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation.

Joseph Utecht, Mathias Brochhausen, John Judkins, Jodi Schneider, Richard D. Boyce

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Toward shareable individualized drug interaction alerts.

Samuel C. Rosko, Philip Hansten, John R. Horn, Daniel C. Malone, Andrew Romero, Richard D. Boyce

Proceedings of the Summit on Clinical Research Informatics, 2017

Extraction of Drug-Drug Interactions from Drug Product Labeling Tables.

Nikola Milosevic, Anay Gupta, Austin Chen, Steven DeMarco, Joshua P. Le, Jodi Schneider, Yifan Ning, Goran Nenadic, Richard D. Boyce

Proceedings of the Summit on Clinical Research Informatics, 2017

Toward a reliable and interoperable public repository for natural product drug interaction study data.

Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Mathias Brochhausen, John Judkins, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine McCune

Proceedings of the AMIA 2017, 2017

2016

Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements.

Katrina M. Romagnoli, Richard D. Boyce, Philip E. Empey, Solomon Adams, Harry Hochheiser

Int. J. Medical Informatics, 2016

Adding Evidence Type Representation to DIDEO.

Mathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies.

Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier

BMC Medical Informatics Decis. Mak., 2015

Toward a complete dataset of drug-drug interaction information from publicly available sources.

Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce

J. Biomed. Informatics, 2015

Formalizing Knowledge and Evidence about Potential Drug-drug Interactions.

Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce

Proceedings of International Workshop on Biomedical Data Mining, 2015

OHDSI: An Open-Source Platform for Observational Data Analytics and Collaborative Research.

Jon D. Duke, Frank J. DeFalco, Chris Knoll, Vojtech Huser, Richard D. Boyce, Patrick B. Ryan

Proceedings of the AMIA 2015, 2015

2014

Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base.

Jodi Schneider, Paolo Ciccarese, Tim Clark, Richard D. Boyce

Proceedings of the 4th Workshop on Linked Science 2014, 2014

Wearable low-latency sleep stage classifier.

Aditi Chemparathy, Hossein Kassiri, Muhammad Tariqus Salam, Richard D. Boyce, Fadime Bekmambetova, Antoine Adamantidis, Roman Genov

Proceedings of the IEEE Biomedical Circuits and Systems Conference, 2014

2013

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness.

Richard D. Boyce, John R. Horn, Oktie Hassanzadeh, Anita de Waard, Jodi Schneider, Joanne S. Luciano, Majid Rastegar-Mojarad, Maria Liakata

J. Biomed. Semant., 2013

UWM-TRIADS: Classifying Drug-Drug Interactions with Two-Stage SVM and Post-Processing.

Majid Rastegar-Mojarad, Richard D. Boyce, Rashmi Prasad

Proceedings of the 7th International Workshop on Semantic Evaluation, 2013

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics.

Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce

Proceedings of the MEDINFO 2013, 2013

2012

Emerging practices for mapping and linking life sciences data using RDF - A case series.

M. Scott Marshall, Richard D. Boyce, Helena F. Deus, Jun Zhao, Egon L. Willighagen, Matthias Samwald, Elgar Pichler, Janos G. Hajagos, Eric Prud'hommeaux, Susie Stephens

J. Web Semant., 2012

Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts.

Richard D. Boyce, Gregory Gardner, Henk Harkema

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

The Influence of Drug Terminologies on the Performance of the NCBO Annotator When Used to Identify Drug Entities in Drug Product Labels.

Robert Guzman, Richard D. Boyce

Proceedings of the AMIA 2012, 2012

2010

Leveraging the semantic web and natural language processing to enhance drug-mechanism knowledge in drug product labels.

Richard D. Boyce, Henk Harkema, Mike Conway

Proceedings of the ACM International Health Informatics Symposium, 2010

2009

iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences.

Richard D. Boyce, Parmit K. Chilana, Timothy M. Rose

Nucleic Acids Res., 2009

Computing with evidence: Part II: An evidential approach to predicting metabolic drug-drug interactions.

Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet

J. Biomed. Informatics, 2009

Computing with evidence: Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment.

Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet

J. Biomed. Informatics, 2009

2007

Modeling Drug Mechanism Knowledge Using Evidence and Truth Maintenance.

Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet

IEEE Trans. Inf. Technol. Biomed., 2007

2005

Qualitative Pharmacokinetic Modeling of Drugs.

Richard D. Boyce, Carol Collins, John R. Horn, Ira J. Kalet

Proceedings of the AMIA 2005, 2005

2003

Conflation System MBP.

Richard D. Boyce, Richard Chase

Proceedings of the International Conference on Imaging Science, Systems and Technology, 2003